当前解析结果
SmilChr01G005934| 统一新 Gene ID | SmilChr01G005934 |
|---|---|
| 名称 | SmilChr01G005934 |
| 描述 | uncharacterized SmilChr01G005934 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75099219 - 75103953 / - |
| NCBI Gene ID | LOC131013436 |
|---|---|
| GeneID | 131013436 |
| locus_tag | - |
| NCBI Name | LOC131013436 |
| 原始查询 | LOC131013436 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884]; symbol=AT4G05360; hit=AT4G05360; species=arabidopsis; confidence=low |
| 产物 | Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884]; symbol=AT4G05360; hit=AT4G05360; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G05360 (AT4G05360)Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884] identity=29.5; qcov=0.352; evalue=2.2e-17; confidence=low |
| Rice | Os11g0656500- identity=27.6; qcov=0.205; evalue=2.38e-17; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF13976 (gag_pre-integrs); PF14223 (Retrotran_gag_2); PF22936 (Pol_BBD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013436 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797495.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057797495.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057797495.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797495.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797495.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75099690 |
GAA |
G |
2bp_deletion | frameshift_variant | 8 | B11,B114,B52,B7,B97,C49,C66,C80 |
Chr1:75099694 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | B11,B114,B52,B7,B97,C49,C66,C80 |
Chr1:75099921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B7,B97,C66 |
Chr1:75099984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C80 |
Chr1:75099994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B24,C42,D4 |
Chr1:75100010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,D11 |
Chr1:75100530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B105,B122,B95,C5 |
Chr1:75100531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C80 |
Chr1:75100559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C42,D4 |
Chr1:75100573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:75100593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B11,B20,B40,B95 |
Chr1:75100597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797495.1PF14223
Retrotran_gag_2 137-308 aa
PF22936
Pol_BBD 706-780 aa
PF13976
gag_pre-integrs 818-857 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797495.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 137 | 308 | 4.4e-22 | 79.3 | gag-polypeptide of LTR copia-type |
XP_057797495.1 |
Pfam | PF22936 |
Pol_BBD | Domain | 706 | 780 | 4.9e-17 | 62.7 | Pol polyprotein, beta-barrel domain |
XP_057797495.1 |
Pfam | PF13976 |
gag_pre-integrs | Domain | 818 | 857 | 9.4e-08 | 32.5 | GAG-pre-integrase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。