Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002330`

染色体: Chr02 坐标: 41002179-41007005 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002330`
名称	SmilChr02G002330
描述	putative E3 ubiquitin-protein ligase RING1a
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41002179 - 41007005 / `+`

ID 对照

NCBI Gene ID	`LOC131013448`
GeneID	`131013448`
locus_tag	`-`
NCBI Name	`LOC131013448`
原始查询	`LOC131013448`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase RING1a
产物	putative E3 ubiquitin-protein ligase RING1a
Arabidopsis	`AT5G44280` (RING1A) RING 1A [Source:NCBI gene (formerly Entrezgene);Acc:834451] identity=45.7; qcov=0.929; evalue=4.38e-108; confidence=high
Rice	`Os01g0796700` - identity=49.8; qcov=0.915; evalue=6.83e-112; confidence=high
GO	-
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131013448

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797513.1`
2	Nucleoplasm	核质	1.00000	`XP_057797515.1`
3	Nuclear body	核内小体	0.20000	`XP_057797513.1`
4	Chromosome	染色体	0.00000	`XP_057797513.1`
5	Centromere	着丝粒	0.00000	`XP_057797513.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41002477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:41002480`	`C`	`CG`	1bp_insertion	frameshift_variant	1	B47
`Chr2:41002480`	`C`	`CG`	1bp_insertion	CDS_variant	1	B47
`Chr2:41004643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:41005458`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B119
`Chr2:41005458`	`TG`	`T`	1bp_deletion	CDS_variant	1	B119
`Chr2:41006203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:41006376`	`C`	`T`	EMS_canonical_SNV	stop_gained	10	A1,A13,B109,B117,B68,B83,B95,C14,C27,C83
`Chr2:41006693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797513.1

454 aa

227

454

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 76-116 aa PF13639 zf-RING_2 76-117 aa PF00097 zf-C3HC4 77-116 aa

XP_057797514.1

453 aa

226

453

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 76-116 aa PF13639 zf-RING_2 76-117 aa PF00097 zf-C3HC4 77-116 aa

XP_057797515.1

449 aa

224

449

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 76-116 aa PF13639 zf-RING_2 76-117 aa PF00097 zf-C3HC4 77-116 aa

XP_057797516.1

448 aa

224

448

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 76-116 aa PF13639 zf-RING_2 76-117 aa PF00097 zf-C3HC4 77-116 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797513.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	76	116	8.9e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057797513.1`	Pfam	`PF13639`	zf-RING_2	Domain	76	117	6.8e-08	33.4	Ring finger domain
`XP_057797513.1`	Pfam	`PF00097`	zf-C3HC4	Domain	77	116	6.4e-10	39.4	Zinc finger, C3HC4 type (RING finger)
`XP_057797514.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	76	116	8.9e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057797514.1`	Pfam	`PF13639`	zf-RING_2	Domain	76	117	6.8e-08	33.4	Ring finger domain
`XP_057797514.1`	Pfam	`PF00097`	zf-C3HC4	Domain	77	116	6.4e-10	39.4	Zinc finger, C3HC4 type (RING finger)
`XP_057797515.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	76	116	8.9e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057797515.1`	Pfam	`PF13639`	zf-RING_2	Domain	76	117	7.1e-08	33.3	Ring finger domain
`XP_057797515.1`	Pfam	`PF00097`	zf-C3HC4	Domain	77	116	6.5e-10	39.4	Zinc finger, C3HC4 type (RING finger)
`XP_057797516.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	76	116	8.9e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057797516.1`	Pfam	`PF13639`	zf-RING_2	Domain	76	117	7.2e-08	33.3	Ring finger domain
`XP_057797516.1`	Pfam	`PF00097`	zf-C3HC4	Domain	77	116	6.5e-10	39.4	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057941532.1
GGATAGACCAATCATGTGAAAATGGGCTGGTCTCTTGCAACCTTTACTAAAATTGTAAGGAACCGGACAGGATCGAACCGGAGGCGAAGAACCCCAATTCTCACAGGTAGAACAGAATGCTCCTCATATACATAAACTGATGCATTCTATTTCTACAAAGAAGAACGAATCTACACTCAAAATTGTGTCCTTCTCTTCATTGACTTCGCCGCCGCCGCCGAGCTCCGCCGTCACCTCGGCGACCTAATGCCAGCGCAGAA...

XM_057941530.1
AATTGTAAGGAACCGGACAGGATCGAACCGGAGGCGAAGAACCCCAATTCTCACAGGTAGAACAGAATGCTCCTCATATACATAAACTGATGCATTCTATTTCTACAAAGAAGAACGAATCTACACTCAAAATTGTGTCCTTCTCTTCATTGACTTCGCCGCCGCCGCCGAGCTCCGCCGTCACCTCGGCGACCTAATGCCAGCGCAGAAACGGCCGCGCGACAGCAGCACTCCTCCGCCGTCGCCGTCGCCTTCGCCGC...

CDS

4 records

下载 CDS FASTA

LOC131013448
ATGCCAGCGCAGAAACGGCCGCGCGACAGCAGCACTCCTCCGCCGTCGCCGTCGCCTTCGCCGCCTCCCGATGCAGAGAAAGGCGACGATTCGCAGCAAGGCAGCGAGAATCACAATCACGAACAACCTGAAGACGCCTCAGATTCCGACAGCAGCTCCTACTCCAGCGGCGGAGAGAAAGACGAATTTATAGTCGTGAAACTAGCTGAAGTACGGAAGGAAGTCCAGTGTCCAATATGCTTAGGCATCATTAGGAAGAC...

Protein

4 records

下载 Protein FASTA

XP_057797513.1
MPAQKRPRDSSTPPPSPSPSPPPDAEKGDDSQQGSENHNHEQPEDASDSDSSSYSSGGEKDEFIVVKLAEVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEQELAFHEEERVRNKQIQASIAQTFRRQAEALGKKRTTRATSATFVRRQGNYRNLRGRRNRGAERHGSDEEEGINGHDESKDSSSTDEHSEAKTKRYKRWGGARTSQPSPGA...

XP_057797514.1
MPAQKRPRDSSTPPPSPSPSPPPDAEKGDDSQQGSENHNHEQPEDASDSDSSSYSSGGEKDEFIVVKLAEVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEERVRNKQIQASIAQTFRRQAEALGKKRTTRATSATFVRRQGNYRNLRGRRNRGAERHGSDEEEGINGHDESKDSSSTDEHSEAKTKRYKRWGGARTSQPSPGAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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