Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002371`

染色体: Chr02 坐标: 41520279-41524958 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002371`
名称	SmilChr02G002371
描述	uncharacterized SmilChr02G002371
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41520279 - 41524958 / `+`

ID 对照

NCBI Gene ID	`LOC131013483`
GeneID	`131013483`
locus_tag	`-`
NCBI Name	`LOC131013483`
原始查询	`LOC131013483`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841505]; symbol=AT1G50830; hit=AT1G50830; species=arabidopsis; confidence=weak
产物	Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841505]; symbol=AT1G50830; hit=AT1G50830; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G50830` (AT1G50830) Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841505] identity=26.9; qcov=0.243; evalue=8.65e-10; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF10536 (PMD)
InterPro	-
eggNOG	-
NR	GeneID:131013483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797554.1`
2	Chromosome	染色体	0.00000	`XP_057797554.1`
3	Centromere	着丝粒	0.00000	`XP_057797554.1`
4	Chromatin	染色质	0.00000	`XP_057797554.1`
5	Telomere	端粒	0.00000	`XP_057797554.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41521960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr2:41522006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:41522022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B132,B80
`Chr2:41522069`	`G`	`A`	EMS_canonical_SNV	stop_gained	73	A13,A15,A2,A21,A23,A24,A25,A6,B10,B106,B115,B122,B124,B132,B135,B137,B20,B22,B23,B28,B29,B31,B4,B40,B47,B5,B54,B56,B57,B59,B62,B63,B65,B67,B7,B71,B80,B82,B83,B86,B89,B90,B92,B94,B96,B98,C1,C10,C13,C14,C16,C20,C31,C39,C40,C42,C48,C51,C52,C54,C56,C57,C59,C60,C61,C65,C70,C76,C77,C78,C80,D4,D8
`Chr2:41522070`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B137,B139,B32,C4
`Chr2:41522070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B139,B32,C4
`Chr2:41522081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,C45,D5
`Chr2:41522098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:41522113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B139,B32,C4,C48
`Chr2:41522122`	`CT`	`C`	1bp_deletion	frameshift_variant	61	A2,A20,A22,A6,B10,B103,B11,B110,B12,B121,B127,B131,B132,B133,B16,B17,B18,B19,B22,B23,B36,B48,B51,B52,B59,B60,B67,B72,B73,B75,B8,B84,B86,B88,B9,B90,B92,B94,B99,C1,C10,C15,C16,C19,C28,C30,C33,C35,C41,C51,C53,C56,C64,C66,C75,C77,C80,C81,D2,D6,D7
`Chr2:41522140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr2:41522144`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797554.1

917 aa

458

917

PMD

PF10536 PMD 135-515 aa

XP_057797555.1

917 aa

458

917

PMD

PF10536 PMD 135-515 aa

XP_057797556.1

917 aa

458

917

PMD

PF10536 PMD 135-515 aa

XP_057797557.1

917 aa

458

917

PMD

PF10536 PMD 135-515 aa

XP_057797558.1

917 aa

458

917

PMD

PF10536 PMD 135-515 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797554.1`	Pfam	`PF10536`	PMD	Domain	135	515	5.2e-26	92.4	Plant mobile domain
`XP_057797555.1`	Pfam	`PF10536`	PMD	Domain	135	515	5.2e-26	92.4	Plant mobile domain
`XP_057797556.1`	Pfam	`PF10536`	PMD	Domain	135	515	5.2e-26	92.4	Plant mobile domain
`XP_057797557.1`	Pfam	`PF10536`	PMD	Domain	135	515	5.2e-26	92.4	Plant mobile domain
`XP_057797558.1`	Pfam	`PF10536`	PMD	Domain	135	515	5.2e-26	92.4	Plant mobile domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057941575.1
GCAAAGGTTTAGTTCATCTCCTTCGGCAACAGACTACAACTTTTGTTCCTTCCCTTTGAAGTAATCAGATCCCGTGGCAGTGGACTACAAAACTCTTCTTGGAATAGAATTCTTCTTCGTCTCGAACTCATCTGCGTTTCCAACTCCAGCTCATATGGAGTTGTTTGATTAGAATAAGAGCTTGAGATCGATCATCATCCTTCATAGTTGCTTGAAATCAGTTTTCTGCATCCTGCCAGGAGCCTGGCGTTGACTGTTGC...

XM_057941574.1
GCAAAGGTTTAGTTCATCTCCTTCGGCAACAGACTACAACTTTTGTTCCTTCCCTTTGAAGTAATCAGATCCCGTGGCAGTGGACTACAAAACTCTTCTTGGAATAGAATTCTTCTTCGTCTCGAACTCATCTGCGTTTCCAACTCCAGCTCATATGGAGTTGTTTGATTAGAATAAGAGCTTGAGATCGATCATCATCCTTCATAGTTGCTTGAAATCAGTTTTCTGCATCCTGCCAGGAATTGGAGACTTTGCACGCA...

CDS

5 records

下载 CDS FASTA

LOC131013483
ATGGTTTTCTTCATGGATGTTTGTGTCTCCAATCAAGATTATTTGGTTATTTTGGACAACAAAGAGCAATCAACTGACAAAGGAACGCGACTCAAAGTACACAAACCATTGATTGGTCATTATGCTAGAAGATGGCCCAGATTTACAAATCCTTTACACAAAGCTATGTGGACTCGGGAGGCTAGGCTAACCAAAACGACCACGGCTTGGACTTTGGAGGCGGCTCATCATCAACCAACTTACGAGGTGACTCCCTTATT...

Protein

5 records

下载 Protein FASTA

XP_057797554.1
MVFFMDVCVSNQDYLVILDNKEQSTDKGTRLKVHKPLIGHYARRWPRFTNPLHKAMWTREARLTKTTTAWTLEAAHHQPTYEVTPLLTLGRRIAEGNAKWRNDMQFFGEFRYIKGYWEWSEDVLSRFASELRTAGIYDPVYASLFTYDRNTEVMKAFCEAWCPTTNTLLTLSGELSISLWDLQFLFGLPAIGRLYDEVVPCTKELLGVTQDGSRFVPVSCKYLLHAYHAIGNDNGKAPRCSVTIEEWIKFWSKKKSRYQP...

XP_057797555.1
MVFFMDVCVSNQDYLVILDNKEQSTDKGTRLKVHKPLIGHYARRWPRFTNPLHKAMWTREARLTKTTTAWTLEAAHHQPTYEVTPLLTLGRRIAEGNAKWRNDMQFFGEFRYIKGYWEWSEDVLSRFASELRTAGIYDPVYASLFTYDRNTEVMKAFCEAWCPTTNTLLTLSGELSISLWDLQFLFGLPAIGRLYDEVVPCTKELLGVTQDGSRFVPVSCKYLLHAYHAIGNDNGKAPRCSVTIEEWIKFWSKKKSRYQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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