当前解析结果
SmilChr01G005948| 统一新 Gene ID | SmilChr01G005948 |
|---|---|
| 名称 | SmilChr01G005948 |
| 描述 | receptor-like protein 6 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75207219 - 75208517 / + |
| NCBI Gene ID | LOC131013487 |
|---|---|
| GeneID | 131013487 |
| locus_tag | - |
| NCBI Name | LOC131013487 |
| 原始查询 | LOC131013487 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 6 |
| 产物 | receptor-like protein 6 |
| Arabidopsis | AT4G13920 (RLP50)receptor like protein 50 [Source:NCBI gene (formerly Entrezgene);Acc:827026] identity=32.7; qcov=0.808; evalue=3.13e-38; confidence=low |
| Rice | Os04g0480500- identity=35.3; qcov=0.819; evalue=6.22e-46; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013487 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797580.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797580.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797580.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797580.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797580.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75207233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B4,B68,B77,B79 |
Chr1:75207411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:75207427 |
ATG |
A |
2bp_deletion | frameshift_variant | 53 | A1,A16,A2,A4,B1,B102,B115,B118,B120,B13,B134,B135,B137,B14,B2,B21,B22,B34,B36,B4,B47,B48,B5,B51,B52,B58,B60,B62,B69,B70,B77,B78,C1,C10,C11,C20,C28,C32,C33,C38,C45,C46,C52,C53,C58,C68,C69,C72,C77,C78,C79,C83,D4 |
Chr1:75207435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B66 |
Chr1:75207440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C75 |
Chr1:75207441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B38,B88 |
Chr1:75207455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:75207467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B38,B88,C62 |
Chr1:75207469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B103,B48,B71,C13 |
Chr1:75207521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,B76 |
Chr1:75207522 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A18 |
Chr1:75207522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797580.1PF08263
LRRNT_2 30-70 aa
PF00560
LRR_1 100-123 aa
PF13855
LRR_8 250-310 aa
PF00560
LRR_1 252-273 aa
PF00560
LRR_1 275-296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797580.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 70 | 1.2e-06 | 29.4 | Leucine rich repeat N-terminal domain |
XP_057797580.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 123 | 5.9e-17 | 58.9 | Leucine Rich Repeat |
XP_057797580.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 250 | 310 | 5e-18 | 65.3 | Leucine rich repeat |
XP_057797580.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 252 | 273 | 5.9e-17 | 58.9 | Leucine Rich Repeat |
XP_057797580.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 275 | 296 | 5.9e-17 | 58.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。