Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002386`

染色体: Chr02 坐标: 41794246-41799827 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002386`
名称	SmilChr02G002386
描述	lipid droplet phospholipase 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41794246 - 41799827 / `+`

ID 对照

NCBI Gene ID	`LOC131013498`
GeneID	`131013498`
locus_tag	`-`
NCBI Name	`LOC131013498`
原始查询	`LOC131013498`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lipid droplet phospholipase 1-like
产物	lipid droplet phospholipase 1-like
Arabidopsis	`AT1G29120` (AT1G29120) Hydrolase-like protein family [Source:NCBI gene (formerly Entrezgene);Acc:839787] identity=66.4; qcov=0.803; evalue=1.7e-127; confidence=high
Rice	`Os02g0787100` - identity=54; qcov=0.664; evalue=1.59e-83; confidence=high
GO	GO:0044255 (GO:0044255)
KEGG	-
Pfam	PF05057 (DUF676)
InterPro	-
eggNOG	-
NR	GeneID:131013498

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057797587.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057797592.1`
3	Chloroplast membrane	叶绿体膜	0.60000	`XP_057797587.1`
4	Endoplasmic reticulum	内质网	0.40000	`XP_057797590.1`
5	Golgi apparatus	高尔基体	0.40000	`XP_057797590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41794608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:41795915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B24,C10,D10
`Chr2:41797366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:41797827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B24,C10,D10
`Chr2:41799070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B67,C1,C49
`Chr2:41799090`	`G`	`GC`	1bp_insertion	frameshift_variant	5	B124,C48,C78,C85,C87
`Chr2:41799090`	`G`	`GC`	1bp_insertion	CDS_variant	5	B124,C48,C78,C85,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797587.1

470 aa

235

470

DUF676

PF05057 DUF676 104-333 aa

XP_057797588.1

417 aa

208

417

DUF676

PF05057 DUF676 51-280 aa

XP_057797589.1

395 aa

198

395

DUF676

PF05057 DUF676 104-140 aa PF05057 DUF676 147-258 aa

XP_057797590.1

394 aa

197

394

DUF676

PF05057 DUF676 28-257 aa

XP_057797592.1

360 aa

180

360

DUF676

PF05057 DUF676 104-333 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797587.1`	Pfam	`PF05057`	DUF676	Family	104	333	1.1e-65	222.0	Putative serine esterase (DUF676)
`XP_057797588.1`	Pfam	`PF05057`	DUF676	Family	51	280	7.8e-66	222.4	Putative serine esterase (DUF676)
`XP_057797589.1`	Pfam	`PF05057`	DUF676	Family	104	140	5e-38	131.5	Putative serine esterase (DUF676)
`XP_057797589.1`	Pfam	`PF05057`	DUF676	Family	147	258	5e-38	131.5	Putative serine esterase (DUF676)
`XP_057797590.1`	Pfam	`PF05057`	DUF676	Family	28	257	6.7e-66	222.6	Putative serine esterase (DUF676)
`XP_057797592.1`	Pfam	`PF05057`	DUF676	Family	104	333	5.9e-66	222.8	Putative serine esterase (DUF676)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009097718.1
AGAAAAAGATTTGAAGAACAAAATAAGACAAAACTTTGTGGAAGAAAACAAAAAAGCAGTCGTCCTCCGATGGCAGCAAAGAGAGTGGGCGCTGGTATGGGGACTCACGCTCTCTGCTACAAGATGAAGATAATATTATGGCGGAATGCCTCTTCTCTTCTCACTCCTACATCATACTCTCTCTCTCTTGAATCTCCTGACTTCGTTCCTACACTACTACCTAGAAATATTGCTATAAATAGTATTTTCGCATACAAATG...

XM_057941604.1
AAATGAGCACATATAAAATTTGCAGAAAAAGATTTGAAGAACAAAATAAGACAAAACTTTGTGGAAGAAAACAAAAAAGCAGTCGTCCTCCGATGGCAGCAAAGAGAGTGGGCGCTGGTATGGGGACTCACGCTCTCTGCTACAAGATGAAGATAATATTATGGCGGAATGCCTCTTCTCTTCTCACTCCTACATCATACTCTCTCTCTCTTGAATCTCCTGACTTCGTTCCTACACTACTACCTAGAAATATTGCTATA...

CDS

5 records

下载 CDS FASTA

LOC131013498
ATGGCAGCAAAGAGAGTGGGCGCTGGGTTGAAGAATATCCTGACGAATCAGAACCTTAAAGCTCAAGCCATGAGTACATCTCAGGGAAACCTCGATCCAAATCTTGCTTCAAAGGTTGCCTCACCAAGGGGCATTGTAAATACAGAGGATAGACCCGATCATCTTCTTGTTCTTGTGCATGGTATATTGGCAAGCCCAAGTGATTGGACTTATTTTGACATGGAGTTAAAGAGACGAGTAGGAAAGAAGTTTTTGATTTA...

LOC131013498
ATGGCGTCCTCGGCGCCTTTCTCTTACTGTTACTCTCCCCAATTTCTTGCCCTTTTCAACCCCATTTCCACCAACAACAATCCCTCTTCCCCTTCCACTTCTTGCTCTCCTTCCCCTTATTCTTCTTATCCCAATCATTGGCATCGTCGGCGAGGCCATTCCCGGAATCTCGCAGCCTTTTCCGGGTTGAAGAATATCCTGACGAATCAGAACCTTAAAGCTCAAGCCATGAGTACATCTCAGGGAAACCTCGATCCAAA...

Protein

5 records

下载 Protein FASTA

XP_057797587.1
MASSAPFSYCYSPQFLALFNPISTNNNPSSPSTSCSPSPYSSYPNHWHRRRGHSRNLAAFSGLKNILTNQNLKAQAMSTSQGNLDPNLASKVASPRGIVNTEDRPDHLLVLVHGILASPSDWTYFDMELKRRVGKKFLIYASSCNMYTKTFTGIDGAGKRLADEVIQVVKKTKSLKKISFLAHSLGGLFARYAIAVLYTPDGSYQSNDVAVSHATELHSLGSSNKGLIAGLEAINFITLATPHLGVRGNRQLPFLFGVPF...

XP_057797588.1
MAAKRVGAGLKNILTNQNLKAQAMSTSQGNLDPNLASKVASPRGIVNTEDRPDHLLVLVHGILASPSDWTYFDMELKRRVGKKFLIYASSCNMYTKTFTGIDGAGKRLADEVIQVVKKTKSLKKISFLAHSLGGLFARYAIAVLYTPDGSYQSNDVAVSHATELHSLGSSNKGLIAGLEAINFITLATPHLGVRGNRQLPFLFGVPFLEKLAAPIAPIFTGRTGSQLFLTDGKPSRPPLLLRMASDCEEGKFISALGAFR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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