当前解析结果
SmilChr02G002391| 统一新 Gene ID | SmilChr02G002391 |
|---|---|
| 名称 | SmilChr02G002391 |
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41829269 - 41830793 / + |
| NCBI Gene ID | LOC131013502 |
|---|---|
| GeneID | 131013502 |
| locus_tag | - |
| NCBI Name | LOC131013502 |
| 原始查询 | LOC131013502 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 产物 | F-box/kelch-repeat protein At3g06240-like |
| Arabidopsis | AT3G06240 (AT3G06240)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=25.8; qcov=0.871; evalue=3.41e-14; confidence=low |
| Rice | Os12g0128000 (OsFbox638)- identity=24.3; qcov=1.04; evalue=4e-11; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013502 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797595.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057797595.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057797595.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797595.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797595.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41829494 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B34 |
Chr2:41829494 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B34 |
Chr2:41829498 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B34 |
Chr2:41829498 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B34 |
Chr2:41829646 |
GC |
G |
1bp_deletion | frameshift_variant | 10 | B129,B132,B42,B43,B59,B8,B91,C7,C71,D9 |
Chr2:41829729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B66 |
Chr2:41829734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,B7,C37,C4 |
Chr2:41829753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B66 |
Chr2:41829822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C72 |
Chr2:41830039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C61,C73,D4 |
Chr2:41830133 |
ACC |
A |
2bp_deletion | frameshift_variant | 148 | A10,A14,A18,A20,A21,A22,A24,A25,A4,A6,A8,A9,B10,B101,B102,B103,B105,B106,B108,B11,B110,B111,B112,B113,B115,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B131,B133,B134,B136,B138,B14,B140,B18,B19,B2,B20,B21,B22,B23,B24,B27,B36,B37,B38,B39,B4,B42,B43,B44,B46,B48,B49,B5,B50,B52,B53,B55,B56,B57,B60,B61,B62,B64,B67,B70,B71,B72,B73,B75,B77,B79,B8,B82,B84,B85,B86,B87,B88,B89,B9,B90,B92,B94,B96,B99,C1,C10,C11,C13,C16,C17,C19,C21,C22,C24,C25,C26,C28,C3,C30,C31,C33,C34,C35,C37,C38,C39,C41,C43,C46,C48,C51,C53,C58,C61,C63,C64,C66,C67,C69,C70,C72,C73,C75,C77,C80,C83,C85,C86,C87,C9,D1,D10,D11,D2,D5 |
Chr2:41830138 |
A |
AT |
1bp_insertion | frameshift_variant | 7 | A3,B115,B32,B6,B66,C45,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797595.1PF00646
F-box 5-43 aa
PF08268
FBA_3 104-291 aa
PF07734
FBA_1 109-293 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797595.1 |
Pfam | PF00646 |
F-box | Domain | 5 | 43 | 2.7e-05 | 24.6 | F-box domain |
XP_057797595.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 104 | 291 | 4.6e-18 | 66.0 | F-box associated beta propeller domain |
XP_057797595.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 109 | 293 | 3.4e-18 | 66.4 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。