Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002408`

染色体: Chr02 坐标: 42040337-42042488 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002408`
名称	SmilChr02G002408
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42040337 - 42042488 / `+`

ID 对照

NCBI Gene ID	`LOC131013515`
GeneID	`131013515`
locus_tag	`-`
NCBI Name	`LOC131013515`
原始查询	`LOC131013515`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=38.1; qcov=1.09; evalue=2.38e-124; confidence=medium
Rice	`Os11g0694850` - identity=42.9; qcov=0.995; evalue=3.46e-152; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131013515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797606.1`
2	Nucleus	细胞核	0.00000	`XP_057797606.1`
3	Chromosome	染色体	0.00000	`XP_057797606.1`
4	Centromere	着丝粒	0.00000	`XP_057797606.1`
5	Chromatin	染色质	0.00000	`XP_057797606.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42040808`	`G`	`GC`	1bp_insertion	frameshift_variant	1	B53
`Chr2:42040808`	`G`	`GC`	1bp_insertion	CDS_variant	1	B53
`Chr2:42040809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:42040902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,C45
`Chr2:42040930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B14,B77,D11
`Chr2:42040964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B114,B69,B70,B85
`Chr2:42041087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B110,B54,C79,C81
`Chr2:42041176`	`TC`	`T`	1bp_deletion	frameshift_variant	4	B1,B14,B77,D11
`Chr2:42041176`	`TC`	`T`	1bp_deletion	CDS_variant	4	B1,B14,B77,D11
`Chr2:42041253`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B71
`Chr2:42041253`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B71
`Chr2:42041321`	`C`	`T`	EMS_canonical_SNV	stop_gained	49	A2,A20,A22,A6,A8,B10,B103,B11,B110,B12,B121,B127,B131,B133,B140,B18,B22,B23,B36,B48,B52,B57,B60,B67,B72,B75,B8,B84,B86,B88,B9,B94,B99,C1,C10,C15,C16,C19,C28,C30,C35,C41,C51,C64,C66,C75,C77,C80,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797606.1

549 aa

274

549

LRR_1

LRR_4

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 6-27 aa PF00560 LRR_1 30-52 aa PF00560 LRR_1 55-76 aa PF12799 LRR_4 101-141 aa PF00560 LRR_1 102-123 aa PF13855 LRR_8 102-161 aa PF00560 LRR_1 127-147 aa PF00069 Pkinase 266-535 aa PF07714 PK_Tyr_Ser-Thr 269-537 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797606.1`	Pfam	`PF00560`	LRR_1	Repeat	6	27	2.2e-19	66.1	Leucine Rich Repeat
`XP_057797606.1`	Pfam	`PF00560`	LRR_1	Repeat	30	52	2.2e-19	66.1	Leucine Rich Repeat
`XP_057797606.1`	Pfam	`PF00560`	LRR_1	Repeat	55	76	2.2e-19	66.1	Leucine Rich Repeat
`XP_057797606.1`	Pfam	`PF12799`	LRR_4	Repeat	101	141	1.2e-11	45.2	Leucine Rich repeats (2 copies)
`XP_057797606.1`	Pfam	`PF00560`	LRR_1	Repeat	102	123	2.2e-19	66.1	Leucine Rich Repeat
`XP_057797606.1`	Pfam	`PF13855`	LRR_8	Repeat	102	161	2.4e-14	53.6	Leucine rich repeat
`XP_057797606.1`	Pfam	`PF00560`	LRR_1	Repeat	127	147	2.2e-19	66.1	Leucine Rich Repeat
`XP_057797606.1`	Pfam	`PF00069`	Pkinase	Domain	266	535	4.9e-42	144.9	Protein kinase domain
`XP_057797606.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	269	537	5.5e-40	138.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941623.1
CCTCACTCTCTTGGAACCCTTACATTCCTTCAACAATTGAATCTCCTAGAAAACAATCTAAAATTTGGATCATCGTCATCTTCTGAAGTGAGCTTTATCACTTCATTGACAAATTGCAGATCGTTGCAGTTTTTCGGAATTAATGGTAATCCTCTTGATGTCACTCTTCCATCTTCCATTGGGAACTTATCCTCCCAACTCCAAACATTTTATGCATCCGACTGTAGACTAAAGGGAAGAATTCCTGCTGAAATAGGCAA...

CDS

1 records

下载 CDS FASTA

LOC131013515
ATGTGTGATTTACAGAGCTTATCTGAATTGAGTTTGAGTGGAAATCAAATGTCGGGTGCAATTCCAAAATGTTTAGGAAATGTCACATCCTTAAGCCATCTTTTTCTAAACTCAAACATGTTCACTTCAACCATACCATCAAGCTTGTGGAGCCTAAATGACTTGCTGACGCTACACTTATCTGCTAACTCATTGACCGGATTTTTACCTCCAGAGGTTGGTAATTTAGCTGCAGCAATTTACATAGATATTTCAATGAA...

Protein

1 records

下载 Protein FASTA

XP_057797606.1
MCDLQSLSELSLSGNQMSGAIPKCLGNVTSLSHLFLNSNMFTSTIPSSLWSLNDLLTLHLSANSLTGFLPPEVGNLAAAIYIDISMNQLSECIPTTIGSLQNLVTLYLAHNRLEGSIPVSLGSITGLETLDLSYNNLSGSVPESLEALQHLDNFNVSFNGLSGEIPSGGPFMNFTMESFKGNKALCGIPKFDVPHCQVLNNHRSKRKKVEFILFILAGVSVFTAIMCLGFIFLKNKRKDKATNAILSVAPERISYYEISR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器