当前解析结果
SmilChr01G005956| 统一新 Gene ID | SmilChr01G005956 |
|---|---|
| 名称 | SmilChr01G005956 |
| 描述 | probable E3 ubiquitin-protein ligase ARI8 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75251717 - 75253499 / + |
| NCBI Gene ID | LOC131013530 |
|---|---|
| GeneID | 131013530 |
| locus_tag | - |
| NCBI Name | LOC131013530 |
| 原始查询 | LOC131013530 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ARI8 |
| 产物 | probable E3 ubiquitin-protein ligase ARI8 |
| Arabidopsis | AT1G65430 (ARI8)IBR domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842854] identity=46.5; qcov=0.967; evalue=5.02e-151; confidence=high |
| Rice | Os08g0540300 (P0666G10.134)- identity=42.6; qcov=1.02; evalue=5.23e-138; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF01485 (IBR); PF13923 (zf-C3HC4_2); PF22191 (IBR_1); PF22605 (IBR_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013530 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797633.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057797633.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057797633.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057797633.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057797633.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75251807 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B71 |
Chr1:75251807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr1:75251869 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B17,B31,B56,B79 |
Chr1:75251869 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B17,B31,B56,B79 |
Chr1:75251882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B31,B56,B79 |
Chr1:75251956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:75251969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B122,B127,B70,C24 |
Chr1:75252001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B118,B137,B83 |
Chr1:75252083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr1:75252085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B36,B48,C84 |
Chr1:75252267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:75252280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797633.1PF13923
zf-C3HC4_2 108-138 aa
PF00097
zf-C3HC4 108-143 aa
PF01485
IBR 177-241 aa
PF22605
IBR_2 264-300 aa
PF22191
IBR_1 265-301 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797633.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 108 | 138 | 1.8e-06 | 28.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057797633.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 108 | 143 | 0.00019 | 21.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057797633.1 |
Pfam | PF01485 |
IBR | Domain | 177 | 241 | 3.8e-20 | 72.4 | IBR domain, a half RING-finger domain |
XP_057797633.1 |
Pfam | PF22605 |
IBR_2 | Domain | 264 | 300 | 2.2e-08 | 34.8 | IBR domain |
XP_057797633.1 |
Pfam | PF22191 |
IBR_1 | Domain | 265 | 301 | 1e-09 | 38.8 | IBR domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。