当前解析结果
SmilChr02G002441| 统一新 Gene ID | SmilChr02G002441 |
|---|---|
| 名称 | SmilChr02G002441 |
| 描述 | U-box domain-containing protein 17-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 42655795 - 42658456 / + |
| NCBI Gene ID | LOC131013538 |
|---|---|
| GeneID | 131013538 |
| locus_tag | - |
| NCBI Name | LOC131013538 |
| 原始查询 | LOC131013538 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 17-like |
| 产物 | U-box domain-containing protein 17-like |
| Arabidopsis | AT1G29340 (PUB17)plant U-box 17 [Source:NCBI gene (formerly Entrezgene);Acc:839808] identity=63.6; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0234300 (OsPUB4)- identity=44.8; qcov=0.993; evalue=0; confidence=medium |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF04826 (Arm_2); PF25368 (PUB10_N); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013538 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057797640.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057797640.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057797640.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797640.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797640.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:42656325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr2:42656577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:42656587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr2:42656860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr2:42657169 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C84 |
Chr2:42657169 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C84 |
Chr2:42657464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A13,B117,C27 |
Chr2:42657499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr2:42657676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B31,C14,C29,C6 |
Chr2:42657685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B20,B36,B51,D10,D11 |
Chr2:42657730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B6,B68,C67 |
Chr2:42657758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797640.1PF25368
PUB10_N 57-165 aa
PF04564
U-box 288-358 aa
PF25598
ARM_PUB 396-672 aa
PF00514
Arm 423-460 aa
PF04826
Arm_2 424-575 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797640.1 |
Pfam | PF25368 |
PUB10_N | Domain | 57 | 165 | 4.3e-10 | 41.0 | PUB10-like, N-terminal domain |
XP_057797640.1 |
Pfam | PF04564 |
U-box | Domain | 288 | 358 | 3.9e-20 | 72.5 | U-box domain |
XP_057797640.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 396 | 672 | 1.3e-19 | 71.4 | Plant U-box protein ARM repeat region |
XP_057797640.1 |
Pfam | PF00514 |
Arm | Repeat | 423 | 460 | 5.4e-17 | 61.9 | Armadillo/beta-catenin-like repeat |
XP_057797640.1 |
Pfam | PF04826 |
Arm_2 | Repeat | 424 | 575 | 0.00017 | 21.9 | Armadillo-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。