Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002442`

染色体: Chr02 坐标: 42658474-42660778 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002442`
名称	SmilChr02G002442
描述	uncharacterized SmilChr02G002442
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42658474 - 42660778 / `-`

ID 对照

NCBI Gene ID	`LOC131013540`
GeneID	`131013540`
locus_tag	`-`
NCBI Name	`LOC131013540`
原始查询	`LOC131013540`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838273]; symbol=AT1G17030; hit=AT1G17030; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838273]; symbol=AT1G17030; hit=AT1G17030; species=arabidopsis; confidence=high
Arabidopsis	`AT1G17030` (AT1G17030) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838273] identity=61.3; qcov=1; evalue=0; confidence=high
Rice	`Os05g0272800` - identity=60.2; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF24804 (DUF7705)
InterPro	-
eggNOG	-
NR	GeneID:131013540

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057797641.1`
2	Vacuole	液泡	0.20000	`XP_057797641.1`
3	Nucleus	细胞核	0.00000	`XP_057797641.1`
4	Chromosome	染色体	0.00000	`XP_057797641.1`
5	Centromere	着丝粒	0.00000	`XP_057797641.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42658899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B113,B36
`Chr2:42658963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:42658998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,C55,C58
`Chr2:42659029`	`AC`	`A`	1bp_deletion	frameshift_variant	67	A10,A16,A18,A2,A20,A22,A3,A4,A9,B108,B111,B112,B12,B129,B134,B18,B19,B20,B21,B22,B23,B26,B27,B30,B32,B33,B36,B40,B52,B54,B58,B62,B64,B65,B69,B76,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C52,C53,C55,C6,C60,C61,C62,C64,C68,C69,C78,C87,C9
`Chr2:42659031`	`AAT`	`A`	2bp_deletion	frameshift_variant	67	A10,A16,A18,A2,A20,A22,A3,A4,A9,B108,B111,B112,B12,B129,B134,B18,B19,B20,B21,B22,B23,B26,B27,B30,B32,B33,B36,B40,B52,B54,B58,B62,B64,B65,B69,B76,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C52,C53,C55,C6,C60,C61,C62,C64,C68,C69,C78,C87,C9
`Chr2:42659036`	`TGG`	`T`	2bp_deletion	frameshift_variant	64	A10,A16,A18,A2,A20,A22,A3,A4,A9,B108,B111,B112,B12,B129,B134,B18,B19,B20,B21,B22,B23,B26,B27,B30,B32,B33,B36,B40,B52,B58,B62,B64,B65,B69,B76,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C52,C53,C55,C6,C60,C61,C64,C68,C69,C87,C9
`Chr2:42659048`	`C`	`CAA`	2bp_insertion	frameshift_variant	63	A10,A16,A18,A2,A20,A22,A3,A4,A7,A9,B108,B111,B112,B12,B129,B134,B18,B19,B2,B20,B22,B23,B26,B32,B33,B36,B52,B58,B62,B64,B65,B69,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C53,C6,C60,C61,C62,C64,C68,C69,C76,C78,C81,C87,C9
`Chr2:42659049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr2:42659053`	`T`	`TTC`	2bp_insertion	frameshift_variant	58	A10,A16,A18,A2,A20,A22,A4,A7,A9,B108,B111,B112,B12,B129,B134,B18,B19,B2,B20,B22,B23,B32,B33,B36,B52,B58,B62,B64,B65,B69,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C53,C6,C60,C61,C62,C64,C69,C76,C78,C87
`Chr2:42659056`	`GCA`	`G`	2bp_deletion	frameshift_variant	58	A10,A16,A18,A2,A22,A4,A7,A9,B108,B111,B112,B12,B129,B134,B18,B19,B2,B20,B22,B23,B32,B33,B36,B52,B58,B62,B64,B65,B69,B85,B90,B91,B93,B94,B99,C1,C11,C13,C25,C27,C28,C30,C37,C44,C46,C48,C5,C53,C6,C60,C61,C62,C64,C69,C76,C78,C81,C87
`Chr2:42659105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:42659199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B71,C62,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797641.1

501 aa

250

501

DUF7705

PF24804 DUF7705 25-497 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797641.1`	Pfam	`PF24804`	DUF7705	Domain	25	497	2.6e-257	854.7	Domain of unknown function (DUF7705)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941658.1
CTTTGGAGTTACAACATGTACACCAAATATCAAAATGGGGCACATCAATATTAGTTCAGCTGGCATTTCAAATTCAATGATGATAATTTCTGGTGGAAAAAGATGATTTTGGATAATGGGTTTTGTTCAAACTTCCAACCTAATCAATTATAGGAAAACAACTGTAAATACCAACTACTTGAAATAGCAAAAGCTAAGTCTCTATTACTCTACGGATATCAAAATCACTAACCATTTTGACTGATCATACTTCAACTAAA...

CDS

1 records

下载 CDS FASTA

LOC131013540
ATGGTTCTTACTGCAGTCTTGATCCTCGTCTCTCTTTCAAGCGTCGTCTGTTTGAGTTTTGAAGGCGGGGATGTATCTGCAGTCGGGGATCCGGGCATGAAAAGGGACGCCCTAAGAGTGGCGATAGAGTCGTGGAATCAATGCAACGAAGTCGGAGAGGAAGCACCTAACATGGGAAGTCCAAGAGCAGCTGATTGCTTTGACATATACAAAGCTTCTCCTCAACAAGGAGAAGATCAGTGCTCACTCTGCAGCCAAGT...

Protein

1 records

下载 Protein FASTA

XP_057797641.1
MVLTAVLILVSLSSVVCLSFEGGDVSAVGDPGMKRDALRVAIESWNQCNEVGEEAPNMGSPRAADCFDIYKASPQQGEDQCSLCSQVPYVLVHRVTEEENRLGIGQPFLGVDQDSLTNVDLYAAEKELYLGSKCQVEDIPNPWQFWMIMLKNGNMDTYAGRCPQNGRKIGPYGPDSQFPCFGKGCMNQPLIYHDYTSLQGPNRTRLRGRFYGSWDLDSDPSKGMQEGNFSYHSVTWEKELGEGSWIFHHVVRTSVKYPWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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