Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002448`

染色体: Chr02 坐标: 42700209-42709165 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002448`
名称	SmilChr02G002448
描述	seipin-2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42700209 - 42709165 / `-`

ID 对照

NCBI Gene ID	`LOC131013544`
GeneID	`131013544`
locus_tag	`-`
NCBI Name	`LOC131013544`
原始查询	`LOC131013544`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	seipin-2
产物	seipin-2
Arabidopsis	`AT1G29760` (AT1G29760) Putative adipose-regulatory protein (Seipin) [Source:NCBI gene (formerly Entrezgene);Acc:839854] identity=50.2; qcov=0.611; evalue=3.59e-97; confidence=high
Rice	`Os09g0534000` - identity=48.3; qcov=0.581; evalue=2.32e-85; confidence=medium
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0019915 (lipid storage); GO:0034389 (lipid droplet organization)
KEGG	-
Pfam	PF06775 (Seipin)
InterPro	-
eggNOG	-
NR	GeneID:131013544

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057797644.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057797644.1`
3	Nucleus membrane	核膜	0.60000	`XP_057797644.1`
4	Nucleus	细胞核	0.00000	`XP_057797645.1`
5	Chromosome	染色体	0.00000	`XP_057797645.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42700535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr2:42700557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr2:42700558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:42700707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,B51
`Chr2:42700970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,A13,B117,C27
`Chr2:42702111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:42702188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B139,B140,B49,C33
`Chr2:42702324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:42702461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797644.1

515 aa

258

515

Seipin

PF06775 Seipin 257-476 aa

XP_057797645.1

453 aa

226

453

Seipin

PF06775 Seipin 195-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797644.1`	Pfam	`PF06775`	Seipin	Family	257	476	8.8e-51	173.3	Putative adipose-regulatory protein (Seipin)
`XP_057797645.1`	Pfam	`PF06775`	Seipin	Family	195	414	7.2e-51	173.6	Putative adipose-regulatory protein (Seipin)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941661.1
TTTTATTTTTTGAATTTTATATTTCGTGGCTAAAAACCGGTTTTCTCCCTACAGCCACGAAATTGCCATGTACAACTCCTGATGCACGACGTATAATACCAACCGAAGAAAAAAAGGCAAATTTTCCCACATACAAATTTCAGGCGATAAACTTGGAAATGGAGGAGACGAAATCGAGCGCGCAATTCGACGACGACGAAGATGCATTTCATGATGCGCTCGACGAATTCGAGTTTTACGATTGCCGGGAGAATTTTTCC...

XM_057941662.1
TTTGAATTTTATATTTCGTGGCTAAAAACCGGTTTTCTCCCTACAGCCACGAAATTGCCATGTACAACTCCTGATGCACGACGTATAATACCAACCGAAGAAAAAAAGGCAAATTTTCCCACATACAAATTTCAGGCGATAAACTTGGAAATGGAGGAGACGAAATCGAGCGCGCAATTCGACGACGACGAAGATGCATTTCATGATGCGCTCGACGAATTCGAGTTTTACGATTGCCGGGAGAATTTTTCCGATCCAAT...

CDS

2 records

下载 CDS FASTA

LOC131013544
ATGGAGGAGACGAAATCGAGCGCGCAATTCGACGACGACGAAGATGCATTTCATGATGCGCTCGACGAATTCGAGTTTTACGATTGCCGGGAGAATTTTTCCGATCCAATCGAATCCAATCGTGATGAATCAATCTCAGATCCCGGCCCTTATCCACCTCTGGAAGACAAATCCCCGCCGCCGGCGGTTCTACGCCGTCGCAGGTCTCGTTCGAGTAAAAAATCATCTGGGGATGACTCGGCGAAGCTCGGCACGCCGGA...

Protein

2 records

下载 Protein FASTA

XP_057797644.1
MEETKSSAQFDDDEDAFHDALDEFEFYDCRENFSDPIESNRDESISDPGPYPPLEDKSPPPAVLRRRRSRSSKKSSGDDSAKLGTPESVDKYLRERKVSLSRKFEEYEKGLEDTKLALLRNEMSEEKSTITDANAAARVEESNSRGSDDSNSSLLFTLAGIVIKPISFQIHLLVKIFTFTIRLAYYSYMIVFNPLGLLMAFRGYIIQQLKKIWNLMFGIVSEYVYEWLKEQRAIWKLGLKCGWGLLWSAYVCAVLVGLLM...

XP_057797645.1
MEETKSSAQFDDDEDAFHDALDEFEFYDCRENFSDPIESNRDESISDPGPYPPLEDKSPPPAVLRRRRSRSSKKSSGDDSAKLGTPESVDKYLRERKVSLSRKFEEYEKGLEDTKLALLRNEMSEEKSTITDANAAARVEESNSRGSDDSNSSLLFTLAEYVYEWLKEQRAIWKLGLKCGWGLLWSAYVCAVLVGLLMSAFVMGGVLIKVVVEEPIRMSRSLNFDYSEKSPVALVPIMSNVRMNQDVKHLVEKPEIMKSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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