当前解析结果
SmilChr02G002450| 统一新 Gene ID | SmilChr02G002450 |
|---|---|
| 名称 | SmilChr02G002450 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 42755311 - 42755889 / - |
| NCBI Gene ID | LOC131013547 |
|---|---|
| GeneID | 131013547 |
| locus_tag | - |
| NCBI Name | LOC131013547 |
| 原始查询 | LOC131013547 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=40.8; qcov=0.766; evalue=1.44e-33; confidence=medium |
| Rice | Os08g0125300- identity=52.4; qcov=0.995; evalue=1.18e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013547 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797649.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057797649.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797649.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797649.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797649.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:42755339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,B2,B67 |
Chr2:42755344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B66,B84,B92,D8 |
Chr2:42755380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B119,C54,C72 |
Chr2:42755383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B119,C54,C72 |
Chr2:42755386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B119,C54,C72 |
Chr2:42755393 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B133,B37 |
Chr2:42755393 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B133,B37 |
Chr2:42755412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B134 |
Chr2:42755416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:42755440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B95,C20 |
Chr2:42755500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,B95 |
Chr2:42755501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B6,B66,C63 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。