当前解析结果
SmilChr01G005984| 统一新 Gene ID | SmilChr01G005984 |
|---|---|
| 名称 | SmilChr01G005984 |
| 描述 | receptor-like protein 54 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75481605 - 75482642 / - |
| NCBI Gene ID | LOC131013566 |
|---|---|
| GeneID | 131013566 |
| locus_tag | - |
| NCBI Name | LOC131013566 |
| 原始查询 | LOC131013566 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 54 |
| 产物 | receptor-like protein 54 |
| Arabidopsis | AT2G15042 (AT2G15042)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:7922469] identity=38.4; qcov=0.928; evalue=5.53e-58; confidence=medium |
| Rice | Os12g0211500- identity=43.7; qcov=0.901; evalue=1.77e-60; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013566 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797672.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797672.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797672.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797672.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797672.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75481668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr1:75481688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B95 |
Chr1:75481712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,C17,C62 |
Chr1:75481718 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B73 |
Chr1:75481718 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B73 |
Chr1:75481735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C75 |
Chr1:75481756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C29 |
Chr1:75481775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr1:75481803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B44,B84,C14,C28 |
Chr1:75481805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:75481809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B115 |
Chr1:75481839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,C14,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797672.1PF00560
LRR_1 4-26 aa
PF13516
LRR_6 26-41 aa
PF00560
LRR_1 140-159 aa
PF00560
LRR_1 161-183 aa
PF13855
LRR_8 178-220 aa
PF13516
LRR_6 183-197 aa
PF00560
LRR_1 185-207 aa
PF00560
LRR_1 210-226 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797672.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 4 | 26 | 1.1e-20 | 69.9 | Leucine Rich Repeat |
XP_057797672.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 26 | 41 | 1.4e-06 | 28.6 | Leucine Rich repeat |
XP_057797672.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 140 | 159 | 1.1e-20 | 69.9 | Leucine Rich Repeat |
XP_057797672.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 161 | 183 | 1.1e-20 | 69.9 | Leucine Rich Repeat |
XP_057797672.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 178 | 220 | 5.4e-17 | 62.0 | Leucine rich repeat |
XP_057797672.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 183 | 197 | 1.4e-06 | 28.6 | Leucine Rich repeat |
XP_057797672.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 185 | 207 | 1.1e-20 | 69.9 | Leucine Rich Repeat |
XP_057797672.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 210 | 226 | 1.1e-20 | 69.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。