Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002477`

染色体: Chr02 坐标: 43153089-43160224 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002477`
名称	SmilChr02G002477
描述	uncharacterized SmilChr02G002477
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43153089 - 43160224 / `+`

ID 对照

NCBI Gene ID	`LOC131013571`
GeneID	`131013571`
locus_tag	`-`
NCBI Name	`LOC131013571`
原始查询	`LOC131013571`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase II degradation factor-like protein (DUF1296) [Source:NCBI gene (formerly Entrezgene);Acc:839809]; symbol=AT1G29350; hit=AT1G29350; species=arabidopsis; confidence=medium
产物	RNA polymerase II degradation factor-like protein (DUF1296) [Source:NCBI gene (formerly Entrezgene);Acc:839809]; symbol=AT1G29350; hit=AT1G29350; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G29350` (AT1G29350) RNA polymerase II degradation factor-like protein (DUF1296) [Source:NCBI gene (formerly Entrezgene);Acc:839809] identity=43.8; qcov=1.04; evalue=3.64e-176; confidence=medium
Rice	`Os01g0663800` (P0003E08.2-1) - identity=37.3; qcov=1.04; evalue=2.57e-141; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF06972 (GIP1_N)
InterPro	-
eggNOG	-
NR	GeneID:131013571

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797677.1`
2	Cytosol	细胞质基质	0.20000	`XP_057797677.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057797678.1`
4	Nucleus	细胞核	0.00000	`XP_057797678.1`
5	Chromosome	染色体	0.00000	`XP_057797678.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43153515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B114,B70,B85
`Chr2:43153543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:43153548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B55,B56,B96
`Chr2:43153626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:43156335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr2:43157246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:43157417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B126,B80,C42
`Chr2:43157474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B70,C58
`Chr2:43159126`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	A15
`Chr2:43159126`	`TTG`	`T`	2bp_deletion	CDS_variant	1	A15
`Chr2:43159322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,B52,C55
`Chr2:43159508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797677.1

896 aa

448

896

GIP1_N

PF06972 GIP1_N 18-76 aa

XP_057797678.1

864 aa

432

864

GIP1_N

PF06972 GIP1_N 18-76 aa

XP_057797679.1

863 aa

432

863

GIP1_N

PF06972 GIP1_N 18-76 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797677.1`	Pfam	`PF06972`	GIP1_N	Domain	18	76	1.2e-29	103.0	GBF-interacting protein 1 N-terminal
`XP_057797678.1`	Pfam	`PF06972`	GIP1_N	Domain	18	76	1.1e-29	103.1	GBF-interacting protein 1 N-terminal
`XP_057797679.1`	Pfam	`PF06972`	GIP1_N	Domain	18	76	1.1e-29	103.1	GBF-interacting protein 1 N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941695.1
TAAGAAAAGCAAAAGCCTCTCCCGTGGCTACTGTGTGCATAACCCCCCAAACACGCACAGATAAAAGAAAAACATAAATAAAAAGCGATAGCGAGAGAGATATACTACAATCTTTAGAGAGAGAGAGACACACAGAGAAGAGGGTTTCCGAAACTTCTGATAAATCTTCACCCCGCTGCGGATGATTCATCACACAACTACAATCCAATTCGAATAACTGCACTACACGGCACACTCACTCTATTTCGTGCTTCGTGCGT...

XM_057941694.1
TAAGAAAAGCAAAAGCCTCTCCCGTGGCTACTGTGTGCATAACCCCCCAAACACGCACAGATAAAAGAAAAACATAAATAAAAAGCGATAGCGAGAGAGATATACTACAATCTTTAGAGAGAGAGAGACACACAGAGAAGAGGGTTTCCGAAACTTCTGATAAATCTTCACCCCGCTGCGGATGATTCATCACACAACTACAATCCAATTCGAATAACTGCACTACACGGCACACTCACTCTATTTCGTGCTTCGTGCGT...

CDS

3 records

下载 CDS FASTA

LOC131013571
ATGAGTACAAGCAGGGGAAGCGGCGCGGGGAATGGGGGCGGGGTACAACTCATTCCCGCGGGGGCGCGGAAGGTGGTGCAGAGCTTGAAGGAGATAGTTAACTGCCCTGAGGCGGAGATCTACGCTGCTCTCAAGGACTGTAATATGGACCCTAACGAGGCTGTCAATCGTCTCCTGTTTCAGGATCCTTTCCTTGAGGTGAAGAGCAAACGAGAAAAGAAAAAAGAGGGTAAAGATAACTATGACTCTAGGCCTCATGG...

Protein

3 records

下载 Protein FASTA

XP_057797677.1
MSTSRGSGAGNGGGVQLIPAGARKVVQSLKEIVNCPEAEIYAALKDCNMDPNEAVNRLLFQDPFLEVKSKREKKKEGKDNYDSRPHGANNSSTRRSRNGADRHLGRGASATYSASATYSASESMHGKPTYKKENGSASYKSNFSSAPGVSANNRSQVPSGFSDGSTTESKGSLLGAADGMPSVVKTASGYQSAWVGVPGQVSMADIVRMGKPHNKASHAPTASHHNIQDTPATEPFPHLRSASDHASKANQSEFSSVQHA...

XP_057797678.1
MSTSRGSGAGNGGGVQLIPAGARKVVQSLKEIVNCPEAEIYAALKDCNMDPNEAVNRLLFQDPFLEVKSKREKKKEGKDNYDSRPHGANNSSTRRSRNGADRHLGRGASATYSASATYSASESMHGKPTYKKENGSASYKSNFSSAPGVSANNRSQVPSGFSDGSTTESKGSLLGAADGMPSVVKTASGYQSAWVGVPGQVSMADIVRMGKPHNKASHAPTASHHNIQDTPATEPFPHLRSASDHASKANQSEFSSVQHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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