当前解析结果
SmilChr02G002485| 统一新 Gene ID | SmilChr02G002485 |
|---|---|
| 名称 | SmilChr02G002485 |
| 描述 | uncharacterized protein At2g29880-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 43241794 - 43244074 / - |
| NCBI Gene ID | LOC131013580 |
|---|---|
| GeneID | 131013580 |
| locus_tag | - |
| NCBI Name | LOC131013580 |
| 原始查询 | LOC131013580 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0328500; species=rice; confidence=low |
| 产物 | hit=Os02g0328500; species=rice; confidence=low |
| Arabidopsis | AT2G24960 (AT2G24960)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817035] identity=23.7; qcov=0.478; evalue=2.83e-06; confidence=weak |
| Rice | Os02g0328500- identity=29.8; qcov=0.506; evalue=5.16e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013580 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797689.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057797689.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057797689.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057797689.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057797689.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:43241947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B104 |
Chr2:43241991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B50,B77,C75 |
Chr2:43242010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:43242019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,A8,B104 |
Chr2:43242025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,A8 |
Chr2:43242035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,C36,C49 |
Chr2:43242042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C5 |
Chr2:43242045 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | B132,B17,B92,C56 |
Chr2:43242045 |
AT |
A |
1bp_deletion | CDS_variant | 4 | B132,B17,B92,C56 |
Chr2:43242051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:43242063 |
G |
GGT |
2bp_insertion | frameshift_variant | 3 | B130,C36,C49 |
Chr2:43242063 |
G |
GGT |
2bp_insertion | CDS_variant | 3 | B130,C36,C49 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。