当前解析结果
SmilChr01G005991| 统一新 Gene ID | SmilChr01G005991 |
|---|---|
| 名称 | SmilChr01G005991 |
| 描述 | receptor-like protein 47 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75515833 - 75517987 / - |
| NCBI Gene ID | LOC131013583 |
|---|---|
| GeneID | 131013583 |
| locus_tag | - |
| NCBI Name | LOC131013583 |
| 原始查询 | LOC131013583 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 47 |
| 产物 | receptor-like protein 47 |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=33.5; qcov=1.13; evalue=3.22e-91; confidence=low |
| Rice | Os12g0211500- identity=40.4; qcov=0.819; evalue=1.09e-97; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013583 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797693.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797693.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797693.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797693.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797693.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75515842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B17,B26,B66,D6 |
Chr1:75515875 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B128,B15 |
Chr1:75515875 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B128,B15 |
Chr1:75515892 |
TTC |
T |
2bp_deletion | frameshift_variant | 1 | B133 |
Chr1:75515892 |
TTC |
T |
2bp_deletion | CDS_variant | 1 | B133 |
Chr1:75515902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B133,B138 |
Chr1:75515906 |
CT |
C |
1bp_deletion | frameshift_variant | 4 | B1,B17,C14,C2 |
Chr1:75515906 |
CT |
C |
1bp_deletion | CDS_variant | 4 | B1,B17,C14,C2 |
Chr1:75515916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:75515932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr1:75515981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B133 |
Chr1:75515986 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | A3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797693.1PF08263
LRRNT_2 27-68 aa
PF23598
LRR_14 89-305 aa
PF00560
LRR_1 98-121 aa
PF00560
LRR_1 248-266 aa
PF00560
LRR_1 341-356 aa
PF00560
LRR_1 383-405 aa
PF00560
LRR_1 506-528 aa
PF13855
LRR_8 506-565 aa
PF00560
LRR_1 530-552 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797693.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 68 | 6.4e-07 | 30.3 | Leucine rich repeat N-terminal domain |
XP_057797693.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 89 | 305 | 2e-18 | 67.0 | Leucine-rich repeat region |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 98 | 121 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 248 | 266 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 341 | 356 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 383 | 405 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 506 | 528 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
XP_057797693.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 506 | 565 | 2.7e-32 | 111.0 | Leucine rich repeat |
XP_057797693.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 530 | 552 | 1.2e-36 | 117.5 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。