Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002490`

染色体: Chr02 坐标: 43317695-43323564 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002490`
名称	SmilChr02G002490
描述	protein REDUCED WALL ACETYLATION 3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43317695 - 43323564 / `+`

ID 对照

NCBI Gene ID	`LOC131013585`
GeneID	`131013585`
locus_tag	`-`
NCBI Name	`LOC131013585`
原始查询	`LOC131013585`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein REDUCED WALL ACETYLATION 3
产物	protein REDUCED WALL ACETYLATION 3
Arabidopsis	`AT2G34410` (RWA3) O-acetyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818004] identity=77.9; qcov=0.994; evalue=0; confidence=high
Rice	`Os01g0631100` (B1158C05.2-1) - identity=77.1; qcov=0.993; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0009834 (plant-type secondary cell wall biogenesis); GO:0010411 (xyloglucan metabolic process); GO:0016407 (acetyltransferase activity); GO:0045492 (xylan biosynthetic process); GO:1990937 (GO:1990937)
KEGG	-
Pfam	PF07779 (Cas1_AcylT)
InterPro	-
eggNOG	-
NR	GeneID:131013585

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057797692.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057797695.1`
3	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057797692.1`
4	Nucleus	细胞核	0.00000	`XP_057797692.1`
5	Chromosome	染色体	0.00000	`XP_057797692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43318140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:43319538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D2,D9
`Chr2:43319539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B87,C41
`Chr2:43319824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B68
`Chr2:43319853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr2:43320438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B110
`Chr2:43320922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr2:43321241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B95,C14,C48
`Chr2:43321526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:43322051`	`C`	`CG`	1bp_insertion	frameshift_variant	14	A6,B110,B25,B29,B39,B85,B97,B99,C1,C13,C37,C41,C51,D1
`Chr2:43322600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:43322806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B70,C57,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797692.1

565 aa

282

565

Cas1_AcylT

PF07779 Cas1_AcylT 93-239 aa PF07779 Cas1_AcylT 244-537 aa

XP_057797694.1

565 aa

282

565

Cas1_AcylT

PF07779 Cas1_AcylT 93-239 aa PF07779 Cas1_AcylT 244-537 aa

XP_057797695.1

541 aa

270

541

Cas1_AcylT

PF07779 Cas1_AcylT 93-513 aa

XP_057797696.1

541 aa

270

541

Cas1_AcylT

PF07779 Cas1_AcylT 93-513 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797692.1`	Pfam	`PF07779`	Cas1_AcylT	Family	93	239	6.2e-86	289.9	10 TM Acyl Transferase domain found in Cas1p
`XP_057797692.1`	Pfam	`PF07779`	Cas1_AcylT	Family	244	537	6.2e-86	289.9	10 TM Acyl Transferase domain found in Cas1p
`XP_057797694.1`	Pfam	`PF07779`	Cas1_AcylT	Family	93	239	6.2e-86	289.9	10 TM Acyl Transferase domain found in Cas1p
`XP_057797694.1`	Pfam	`PF07779`	Cas1_AcylT	Family	244	537	6.2e-86	289.9	10 TM Acyl Transferase domain found in Cas1p
`XP_057797695.1`	Pfam	`PF07779`	Cas1_AcylT	Family	93	513	7.9e-91	306.0	10 TM Acyl Transferase domain found in Cas1p
`XP_057797696.1`	Pfam	`PF07779`	Cas1_AcylT	Family	93	513	7.9e-91	306.0	10 TM Acyl Transferase domain found in Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057941711.1
AAGTGTGAAAATAATTGAAGAACTAAAATAGAAAAAATTGCATAATCATAAACCAAACTGCAACCACCCCTCTTAACGGTTGGTTGGTTTGAGAGAGAAGAAAGAAAGAAGAAGAAGAGAGAGACATCTCGACCGAACAAGTCGCCATTATCAATTCTTGAAGCAAACGAAGACGTCAATTCTACCCACTGACTCCTGCTCTTGTTTTCCTGCAATTTCTATTCATTTGTTTGCTTCAGATCTCTGCATTCCCTCTCCCA...

XM_057941709.1
AAGTGTGAAAATAATTGAAGAACTAAAATAGAAAAAATTGCATAATCATAAACCAAACTGCAACCACCCCTCTTAACGGTTGGTTGGTTTGAGAGAGAAGAAAGAAAGAAGAAGAAGAGAGAGACATCTCGACCGAACAAGTCGCCATTATCAATTCTTGAAGCAAACGAAGACGTCAATTCTACCCACTGACTCCTGCTCTTGTTTTCCTGCAATTTCTATTCATTTGTTTGCTTCAGATCTCTGCATTCCCTCTCCCA...

CDS

4 records

下载 CDS FASTA

LOC131013585
ATGGCTGTGGATGCTGGGCCTGTGACGCCTGGTCAGGTGTCGTTTCTGCTTGGAGTAATCCCGATTATTATCACATGGATATATGCTGAGTGGTTGGAGTATAGGAAATCTTCTACCCCTTCTAAAGTTCATTCAGATAATAACCTGGCTGAATTGGAAAGTGAAGCTATCAAAGAAGACGAGCGAGCAGTATTAATGGAAGGTGGTCTCGCTAAATCTGCATCTACAAAATCATCCAGTCCATCAATTAAGACTAACAT...

Protein

4 records

下载 Protein FASTA

XP_057797692.1
MAVDAGPVTPGQVSFLLGVIPIIITWIYAEWLEYRKSSTPSKVHSDNNLAELESEAIKEDERAVLMEGGLAKSASTKSSSPSIKTNIIRFLTMDDAFLLEHRLLLRAMAEFGGILFYFYICDRTDIFSDSTKNYNRDLFIFLYILLIITSAMTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAAAEIYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSVARFAQVILQSVTVLFWSSNNWFNLTGLLQM...

XP_057797694.1
MAVDAGPVTPGQVSFLLGVIPIIITWIYAEWLEYRKSSTPSKVHSDNNLAELESEAIKEDERAVLMEGGLAKSASTKSSSPSIKTNIIRFLTMDDAFLLEHRLLLRAMAEFGGILFYFYICDRTDIFSDSTKNYNRDLFIFLYILLIITSAMTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAAAEIYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSVARFAQVILQSVTVLFWSSNNWFNLTGLLQM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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