Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002492`

染色体: Chr02 坐标: 43353388-43360388 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002492`
名称	SmilChr02G002492
描述	chlorophyll a-b binding protein 21, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43353388 - 43360388 / `-`

ID 对照

NCBI Gene ID	`LOC131013588`
GeneID	`131013588`
locus_tag	`-`
NCBI Name	`LOC131013588`
原始查询	`LOC131013588`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chlorophyll a-b binding protein 21, chloroplastic-like
产物	chlorophyll a-b binding protein 21%2C chloroplastic-like
Arabidopsis	`AT1G29930` (CAB1) chlorophyll A/B binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:839871] identity=88; qcov=0.666; evalue=1.49e-172; confidence=high
Rice	`Os01g0600900` (CAB2R) - identity=86.5; qcov=0.666; evalue=2.7e-167; confidence=high
GO	GO:0009416 (response to light stimulus); GO:0009535 (chloroplast thylakoid membrane); GO:0009768 (photosynthesis, light harvesting in photosystem I); GO:0009941 (chloroplast envelope); GO:0010287 (plastoglobule)
KEGG	smil00196 (Photosynthesis - antenna proteins - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00504 (Chloroa_b-bind)
InterPro	-
eggNOG	-
NR	GeneID:131013588

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057797698.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057797698.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057797698.1`
4	Nucleus	细胞核	0.00000	`XP_057797698.1`
5	Chromosome	染色体	0.00000	`XP_057797698.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43353484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr2:43353585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B87,C62
`Chr2:43353712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:43353728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr2:43353851`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B55
`Chr2:43353851`	`CA`	`C`	1bp_deletion	CDS_variant	1	B55
`Chr2:43359421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr2:43359457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:43359460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr2:43359505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B87,C62
`Chr2:43359525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B73,B96
`Chr2:43359648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797698.1

401 aa

200

401

Chloroa_b-bind

PF00504 Chloroa_b-bind 66-232 aa PF00504 Chloroa_b-bind 280-367 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797698.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	66	232	3e-75	252.9	Chlorophyll A-B binding protein
`XP_057797698.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	280	367	3e-75	252.9	Chlorophyll A-B binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941715.1
CACTTCCATTTTCTCCATCTCTCAATCCCAACTTTCTTTGCATAACCCATAAATTCAGAACTTGTATTTCTTACTAATACAATGGCTGCTTCTTCAATGGCTCTTTCTTCTCCTTCTTTCGCCGGTCAGGCGGTGAAGCTCTCTCCCGCTGCCTCAGAGACCGCCGGAAACGGCAGAGTCTCAATGAGGAAGAGCACCAAAAAGCCTGCAGTCTCCTCCGGCAGCCCATGGTACGGCCCCGACCGCGTTAAGTACTTAGG...

CDS

1 records

下载 CDS FASTA

LOC131013588
ATGGCTGCTTCTTCAATGGCTCTTTCTTCTCCTTCTTTCGCCGGTCAGGCGGTGAAGCTCTCTCCCGCTGCCTCAGAGACCGCCGGAAACGGCAGAGTCTCAATGAGGAAGAGCACCAAAAAGCCTGCAGTCTCCTCCGGCAGCCCATGGTACGGCCCCGACCGCGTTAAGTACTTAGGCCCATTCTCCGGCGAAGCCCCAAGCTACCTCACCGGAGAATTCCCCGGCGACTACGGCTGGGACACCGCCGGACTTTCTGC...

Protein

1 records

下载 Protein FASTA

XP_057797698.1
MAASSMALSSPSFAGQAVKLSPAASETAGNGRVSMRKSTKKPAVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAIWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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