当前解析结果
SmilChr02G002508| 统一新 Gene ID | SmilChr02G002508 |
|---|---|
| 名称 | SmilChr02G002508 |
| 描述 | DNA replication licensing factor MCM3 homolog 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 43559919 - 43564748 / + |
| NCBI Gene ID | LOC131013596 |
|---|---|
| GeneID | 131013596 |
| locus_tag | - |
| NCBI Name | LOC131013596 |
| 原始查询 | LOC131013596 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA replication licensing factor MCM3 homolog 2-like |
| 产物 | DNA replication licensing factor MCM3 homolog 2-like |
| Arabidopsis | AT5G46280 (MCM3)Minichromosome maintenance (MCM2/3/5) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834670] identity=67.9; qcov=0.992; evalue=0; confidence=high |
| Rice | Os05g0476200 (OsMCM3)- identity=68; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0000727 (double-strand break repair via break-induced replication); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006271 (DNA strand elongation involved in DNA replication); GO:0016887 (ATP hydrolysis activity); GO:0017116 (single-stranded DNA helicase activity); GO:0032508 (GO:0032508); GO:0042555 (MCM complex); GO:1902975 (mitotic DNA replication initiation) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00493 (MCM); PF01078 (Mg_chelatase); PF14551 (MCM_N); PF17207 (MCM_OB); PF17855 (MCM_lid); PF23191 (WHD_MCM3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013596 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797704.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057797704.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057797704.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057797704.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057797704.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:43560460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr2:43561787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,C29 |
Chr2:43562244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,A9,B47,C56,C65 |
Chr2:43562397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B131,B35,B47,C65 |
Chr2:43563562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B42,B8,C60 |
Chr2:43563679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,A13,B117,C27 |
Chr2:43563680 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | A7 |
Chr2:43563680 |
AC |
A |
1bp_deletion | CDS_variant | 1 | A7 |
Chr2:43564176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B104,C8,D11,D9 |
Chr2:43564188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B140,B63,B81,B83 |
Chr2:43564211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797704.1PF14551
MCM_N 13-99 aa
PF17207
MCM_OB 112-242 aa
PF00493
MCM 279-502 aa
PF01078
Mg_chelatase 386-453 aa
PF17855
MCM_lid 557-641 aa
PF23191
WHD_MCM3_C 713-783 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797704.1 |
Pfam | PF14551 |
MCM_N | Domain | 13 | 99 | 4.6e-09 | 37.3 | MCM N-terminal domain |
XP_057797704.1 |
Pfam | PF17207 |
MCM_OB | Domain | 112 | 242 | 3.1e-29 | 102.0 | MCM OB domain |
XP_057797704.1 |
Pfam | PF00493 |
MCM | Domain | 279 | 502 | 3.8e-96 | 321.2 | MCM P-loop domain |
XP_057797704.1 |
Pfam | PF01078 |
Mg_chelatase | Domain | 386 | 453 | 3.8e-09 | 37.0 | Magnesium chelatase, subunit ChlI |
XP_057797704.1 |
Pfam | PF17855 |
MCM_lid | Domain | 557 | 641 | 1.5e-25 | 90.2 | MCM AAA-lid domain |
XP_057797704.1 |
Pfam | PF23191 |
WHD_MCM3_C | Domain | 713 | 783 | 1.6e-10 | 41.7 | MCM3-like, winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。