Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002515`

染色体: Chr02 坐标: 43650178-43652582 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002515`
名称	SmilChr02G002515
描述	general transcription and DNA repair factor IIH helicase subunit XPB-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43650178 - 43652582 / `-`

ID 对照

NCBI Gene ID	`LOC131013606`
GeneID	`131013606`
locus_tag	`-`
NCBI Name	`LOC131013606`
原始查询	`LOC131013606`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	general transcription and DNA repair factor IIH helicase subunit XPB-like
产物	general transcription and DNA repair factor IIH helicase subunit XPB-like
Arabidopsis	`AT5G41360` (XPB2) homolog of Xeroderma pigmentosum complementation group B 2 [Source:NCBI gene (formerly Entrezgene);Acc:834138] identity=83.3; qcov=0.267; evalue=9.18e-07; confidence=weak
Rice	`Os01g0691600` (OsXPB2) - identity=51; qcov=0.567; evalue=3.71e-07; confidence=low
GO	-
KEGG	-
Pfam	PF16203 (ERCC3_RAD25_C)
InterPro	-
eggNOG	-
NR	GeneID:131013606

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057797713.1`
2	Endoplasmic reticulum	内质网	0.80000	`XP_057797716.1`
3	Mitochondrion	线粒体	0.80000	`XP_057797718.1`
4	Nucleus	细胞核	0.40000	`XP_057797714.1`
5	Cytosol	细胞质基质	0.40000	`XP_057797714.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43650816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,C54
`Chr2:43650850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:43650862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B38,B66,C55,C61
`Chr2:43650865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:43650905`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A10,B104,B24,B38,B39
`Chr2:43650905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B104,B24,B38,B39
`Chr2:43650962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B125,B133,C36
`Chr2:43650994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr2:43651079`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B15,B44,B77,B88,C49
`Chr2:43651079`	`CA`	`C`	1bp_deletion	CDS_variant	5	B15,B44,B77,B88,C49
`Chr2:43651088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C65,D4
`Chr2:43651128`	`C`	`T`	EMS_canonical_SNV	stop_gained	44	A10,A18,A22,A3,B103,B111,B113,B117,B121,B124,B135,B27,B37,B40,B44,B48,B49,B60,B64,B67,B69,B7,B75,B77,B85,B90,B92,B94,C10,C13,C21,C45,C48,C53,C59,C6,C60,C7,C71,C78,C83,C85,D3,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797712.1

142 aa

142

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-57 aa

XP_057797713.1

141 aa

141

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-44 aa

XP_057797716.1

138 aa

138

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-57 aa

XP_057797717.1

137 aa

137

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-44 aa

XP_057797718.1

135 aa

135

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-58 aa

XP_057797719.1

134 aa

134

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-57 aa

XP_057797720.1

132 aa

132

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 1-47 aa

XP_057797721.1

131 aa

131

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 1-35 aa

XP_057797722.1

90 aa

ERCC3_RAD25_C

PF16203 ERCC3_RAD25_C 10-57 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797712.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	57	1.9e-08	34.6	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797713.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	44	2.9e-08	34.0	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797716.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	57	1.9e-08	34.6	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797717.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	44	2.9e-08	34.0	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797718.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	58	1.5e-08	34.9	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797719.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	57	1.7e-08	34.8	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797720.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	1	47	6.3e-08	32.9	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797721.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	1	35	9.7e-08	32.3	ERCC3/RAD25/XPB C-terminal helicase
`XP_057797722.1`	Pfam	`PF16203`	ERCC3_RAD25_C	Domain	10	57	7.3e-09	36.0	ERCC3/RAD25/XPB C-terminal helicase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA

XR_009097744.1
AAAACTACAAGCCTTAGTTCTGTTCGTCTCTCTCATCTAATCTCTCTGCCTTCTCCTGCGTCCTCCCTGTCTCTCGACTCTCTCTCTCTCCCCTCTCGACTCCGCCGCCGGCGCCGCTGCCCCGCGCAGGCCCGTCGCCGCCCACCCTCGCTGCTGCCCCGCGCCCACCCACCCTCGCTGTTGCCTCGCGCCCGCCCACCCTTGTCGCTGCATCGCACCGCTGCCGCCTCGGCGCTTTCCTCCTCCGCGCAGTCGCCACT...

XR_009097743.1
AAAACTACAAGCCTTAGTTCTGTTCGTCTCTCTCATCTAATCTCTCTGCCTTCTCCTGCGTCCTCCCTGTCTCTCGACTCTCTCTCTCTCCCCTCTCGACTCCGCCGCCGGCGCCGCTGCCCCGCGCAGGCCCGTCGCCGCCCACCCTCGCTGCTGCCCCGCGCCCACCCACCCTCGCTGTTGCCTCGCGCCCGCCCACCCTTGTCGCTGCATCGCACCGCTGCCGCCTCGGCGCTTTCCTCCTCCGCGCAGTCGCCACT...

CDS

11 records

下载 CDS FASTA

LOC131013606
ATGAAGCCTCAGGACACGGTGGCAGGAGGAATGTATTATTCAACAAAAAGGCAGCAGTTTTTGATCGATCAATGTTATAGTTTTAAGGTGCTGATCTTGTTGGAAAGGTTGAAAGAAACATCCCTGAAGATGACCCCAGAAATCCGGTTGTCATTGCTGACAATGTTGGTGATAATGTCGGAGATATTGCTGGAATGGGATCTGATCTTTTTGGTTCATATGCCGAATCCTCTTCGTTGCAACTCTAATAAGATAAAGTT...

LOC131013606
ATGAAGCCTCAGGACACGGTGGCAGGAGGAATGTATTATTCAACAAAAAGGCAGCAGTTTTTGATCGATCAATGTTATAGTTTTAAGGTGCTGATCTTGTTGGAAAGGTTGAAAGAAACATCCCTGAAGATGACCCCAGAAATCCGGTCATTGCTGACAATGTTGGTGATAATGTCGGAGATATTGCTGGAATGGGATCTGATCTTTTTGGTTCATATGCCGAATCCTCTTCGTTGCAACTCTAATAAGATAAAGTTCAG...

Protein

11 records

下载 Protein FASTA

XP_057797712.1
MKPQDTVAGGMYYSTKRQQFLIDQCYSFKVLILLERLKETSLKMTPEIRLSLLTMLVIMSEILLEWDLIFLVHMPNPLRCNSNKIKFSAVLAAAGLIACHASKRFPDEQWEKYAVVTLMDCRSALDPVLSSHHICKFCWIHY

XP_057797713.1
MKPQDTVAGGMYYSTKRQQFLIDQCYSFKVLILLERLKETSLKMTPEIRSLLTMLVIMSEILLEWDLIFLVHMPNPLRCNSNKIKFSAVLAAAGLIACHASKRFPDEQWEKYAVVTLMDCRSALDPVLSSHHICKFCWIHY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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