Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002528`

染色体: Chr02 坐标: 43985345-43986785 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002528`
名称	SmilChr02G002528
描述	glucan endo-1,3-beta-glucosidase 11-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43985345 - 43986785 / `-`

ID 对照

NCBI Gene ID	`LOC131013620`
GeneID	`131013620`
locus_tag	`-`
NCBI Name	`LOC131013620`
原始查询	`LOC131013620`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucan endo-1,3-beta-glucosidase 11-like
产物	glucan endo-1%2C3-beta-glucosidase 11-like
Arabidopsis	`AT1G30080` (AT1G30080) Glycosyl hydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839887] identity=70.8; qcov=0.934; evalue=1.72e-176; confidence=high
Rice	`Os06g0531000` - identity=62; qcov=0.954; evalue=6.77e-148; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process)
KEGG	-
Pfam	PF00332 (Glyco_hydro_17)
InterPro	-
eggNOG	-
NR	GeneID:131013620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.60000	`XP_057797735.1`
2	Secreted	分泌到胞外	0.40000	`XP_057797735.1`
3	Nucleus	细胞核	0.00000	`XP_057797735.1`
4	Chromosome	染色体	0.00000	`XP_057797735.1`
5	Centromere	着丝粒	0.00000	`XP_057797735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43985546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B63,B81,B83
`Chr2:43985705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:43985766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:43985861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:43985900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B108,C12,C23,C57
`Chr2:43986024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:43986097`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	C62
`Chr2:43986097`	`AGC`	`A`	2bp_deletion	CDS_variant	1	C62
`Chr2:43986101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr2:43986176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B81,B83
`Chr2:43986188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:43986215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797735.1

350 aa

175

350

Glyco_hydro_17

PF00332 Glyco_hydro_17 27-342 aa

XP_057797736.1

348 aa

174

348

Glyco_hydro_17

PF00332 Glyco_hydro_17 25-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797735.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	27	342	6.3e-77	259.9	Glycosyl hydrolases family 17
`XP_057797736.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	25	340	6.2e-77	259.9	Glycosyl hydrolases family 17

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941752.1
AAAGAAAGGAATTCACTGACATACAATATATGCATACACATCTATATGTATATTGTATATATATCATCTTATCTATTACATTTGATTAATTTTAGCATAACTTTTCTTAATTGGTGTCTTCAATTTTGATAGAAATCAAACACCTCTCTCTCTCTCTCTCACGGGAGGTCTTGTTAGCATGTTTGCCATGTTAAAAACACTTGCATTTGTTTTAACTTTATCAGGTTTAGGTGTTTTGAAAGAAGTGGAATCCTTCGGCA...

XM_057941753.1
TATATATCATCTTATCTATTACATTTGATTAATTTTAGCATAACTTTTCTTAATTGGTGTCTTCAATTTTGATAGAAATCAAACACCTCTCTCTCTCTCTCTCACGGGAGGTCTTGTTAGCATGTTTGCCATGTTAAAAACACTTGCATTTGTTTTAACTTTATCAGGTGTTTTGAAAGAAGTGGAATCCTTCGGCATCAACTACGGGCAAGTCGGAAATAACCTGCCGCCGCCGGAAAGAGTTATCGATCTCCTCCACT...

CDS

2 records

下载 CDS FASTA

LOC131013620
ATGTTTGCCATGTTAAAAACACTTGCATTTGTTTTAACTTTATCAGGTGTTTTGAAAGAAGTGGAATCCTTCGGCATCAACTACGGGCAAGTCGGAAATAACCTGCCGCCGCCGGAAAGAGTTATCGATCTCCTCCACTCTCTCAGGCTAACAAAAACCCGAATTTACGACACAAACCCTCAAATTCTAGCGGCATTTGCCAACTCAAGCATTGAAATCGTCGTCATGGTCGAAAACGAGATGCTTTCCACTTTAACGGA...

LOC131013620
ATGTTTGCCATGTTAAAAACACTTGCATTTGTTTTAACTTTATCAGGTTTAGGTGTTTTGAAAGAAGTGGAATCCTTCGGCATCAACTACGGGCAAGTCGGAAATAACCTGCCGCCGCCGGAAAGAGTTATCGATCTCCTCCACTCTCTCAGGCTAACAAAAACCCGAATTTACGACACAAACCCTCAAATTCTAGCGGCATTTGCCAACTCAAGCATTGAAATCGTCGTCATGGTCGAAAACGAGATGCTTTCCACTTT...

Protein

2 records

下载 Protein FASTA

XP_057797735.1
MFAMLKTLAFVLTLSGLGVLKEVESFGINYGQVGNNLPPPERVIDLLHSLRLTKTRIYDTNPQILAAFANSSIEIVVMVENEMLSTLTDPNQALQWVMTRIKPYFPATKITGIAVGNELFTGADATLISYLVPAMVSIHAALVRLGLDRFMHVSSPSSLAVLQESYPPSAGSFRPELNRIMPQLLQFLAATRAPFWINAYPYFAYKGDPNRIPLDYVLFNPNPGVVDPYTKLHYDNMLYAQVDAVIFAMAKMGYGGIEVR...

XP_057797736.1
MFAMLKTLAFVLTLSGVLKEVESFGINYGQVGNNLPPPERVIDLLHSLRLTKTRIYDTNPQILAAFANSSIEIVVMVENEMLSTLTDPNQALQWVMTRIKPYFPATKITGIAVGNELFTGADATLISYLVPAMVSIHAALVRLGLDRFMHVSSPSSLAVLQESYPPSAGSFRPELNRIMPQLLQFLAATRAPFWINAYPYFAYKGDPNRIPLDYVLFNPNPGVVDPYTKLHYDNMLYAQVDAVIFAMAKMGYGGIEVRVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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