当前解析结果
SmilChr02G000655| 统一新 Gene ID | SmilChr02G000655 |
|---|---|
| 名称 | SmilChr02G000655 |
| 描述 | cytochrome P450 716B1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 9933779 - 9935770 / - |
| NCBI Gene ID | LOC131013665 |
|---|---|
| GeneID | 131013665 |
| locus_tag | - |
| NCBI Name | LOC131013665 |
| 原始查询 | LOC131013665 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 716B1-like |
| 产物 | cytochrome P450 716B1-like |
| Arabidopsis | AT5G36110 (CYP716A1)cytochrome P450, family 716, subfamily A, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:833607] identity=35.9; qcov=0.928; evalue=4.83e-102; confidence=medium |
| Rice | Os07g0520300 (OJ1793_E11.119)- identity=50.3; qcov=0.954; evalue=3.71e-161; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016125 (sterol metabolic process); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057797773.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057797773.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797773.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797773.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797773.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:9933852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B34,B45,B75,B78 |
Chr2:9933937 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A19,B122,B22,C25,C27,C30,C31,C5 |
Chr2:9934087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:9934090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:9934555 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B66,C50 |
Chr2:9934555 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B66,C50 |
Chr2:9934794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C81 |
Chr2:9934827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B86,B89,B91,C1,C75 |
Chr2:9935019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:9935020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B3,B37,C56,C63 |
Chr2:9935021 |
T |
TGG |
2bp_insertion | frameshift_variant | 1 | B64 |
Chr2:9935021 |
T |
TGG |
2bp_insertion | CDS_variant | 1 | B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797773.1PF00067
p450 30-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797773.1 |
Pfam | PF00067 |
p450 | Domain | 30 | 460 | 9.3e-69 | 233.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。