当前解析结果
SmilChr01G006053| 统一新 Gene ID | SmilChr01G006053 |
|---|---|
| 名称 | SmilChr01G006053 |
| 描述 | aspartic proteinase nepenthesin-1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76018001 - 76019191 / - |
| NCBI Gene ID | LOC131013865 |
|---|---|
| GeneID | 131013865 |
| locus_tag | - |
| NCBI Name | LOC131013865 |
| 原始查询 | LOC131013865 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic proteinase nepenthesin-1-like |
| 产物 | aspartic proteinase nepenthesin-1-like |
| Arabidopsis | AT4G30040 (AT4G30040)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:829127] identity=33.6; qcov=0.939; evalue=1.3e-53; confidence=low |
| Rice | Os08g0469100- identity=29.7; qcov=0.909; evalue=2.79e-38; confidence=low |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0005576 (extracellular region); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013865 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057797813.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797813.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797813.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797813.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797813.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76018061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:76018134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:76018408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr1:76018683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:76018695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,B36,B58,B77 |
Chr1:76018728 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | A16,C30 |
Chr1:76018728 |
GA |
G |
1bp_deletion | CDS_variant | 2 | A16,C30 |
Chr1:76018815 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | A16,C30 |
Chr1:76018815 |
GA |
G |
1bp_deletion | CDS_variant | 2 | A16,C30 |
Chr1:76018931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B25,B65,C28 |
Chr1:76019165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B83,C32,C68 |
Chr1:76019186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797813.1PF14543
TAXi_N 42-208 aa
PF00026
Asp 43-107 aa
PF00026
Asp 119-387 aa
PF14541
TAXi_C 224-388 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797813.1 |
Pfam | PF14543 |
TAXi_N | Domain | 42 | 208 | 4.6e-34 | 118.8 | Xylanase inhibitor N-terminal |
XP_057797813.1 |
Pfam | PF00026 |
Asp | Domain | 43 | 107 | 2.9e-20 | 73.7 | Eukaryotic aspartyl protease |
XP_057797813.1 |
Pfam | PF00026 |
Asp | Domain | 119 | 387 | 2.9e-20 | 73.7 | Eukaryotic aspartyl protease |
XP_057797813.1 |
Pfam | PF14541 |
TAXi_C | Domain | 224 | 388 | 1.1e-26 | 94.3 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。