当前解析结果
SmilChr03G001967| 统一新 Gene ID | SmilChr03G001967 |
|---|---|
| 名称 | SmilChr03G001967 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 28301577 - 28309521 / + |
| NCBI Gene ID | LOC131014010 |
|---|---|
| GeneID | 131014010 |
| locus_tag | - |
| NCBI Name | LOC131014010 |
| 原始查询 | LOC131014010 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G16970 (AER)alkenal reductase [Source:NCBI gene (formerly Entrezgene);Acc:831560] identity=46.7; qcov=1.01; evalue=3.81e-111; confidence=high |
| Rice | Os06g0602900- identity=57.6; qcov=0.997; evalue=1.76e-138; confidence=high |
| GO | GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797930.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057797930.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057797930.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797930.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797930.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:28301848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B95,B98,C50 |
Chr3:28301931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B95,B98,C50 |
Chr3:28302667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,C24,C42,C6 |
Chr3:28302698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C28 |
Chr3:28306269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:28309136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B80,B95,B98,C50 |
Chr3:28309151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:28309184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B80,B95,B98,C50 |
Chr3:28309256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:28309324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B48,D5 |
Chr3:28309346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C36 |
Chr3:28309373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797930.1PF16884
ADH_N_2 9-120 aa
PF00107
ADH_zinc_N 173-293 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797930.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 9 | 120 | 3.2e-17 | 63.1 | N-terminal domain of oxidoreductase |
XP_057797930.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 173 | 293 | 5.4e-25 | 88.5 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。