Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001992`

染色体: Chr03 坐标: 29331425-29337402 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001992`
名称	SmilChr03G001992
描述	uncharacterized SmilChr03G001992
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	29331425 - 29337402 / `-`

ID 对照

NCBI Gene ID	`LOC131014013`
GeneID	`131014013`
locus_tag	`-`
NCBI Name	`LOC131014013`
原始查询	`LOC131014013`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:829369]; symbol=AT4G32350; hit=AT4G32350; species=arabidopsis; confidence=weak
产物	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:829369]; symbol=AT4G32350; hit=AT4G32350; species=arabidopsis; confidence=weak
Arabidopsis	`AT4G32350` (AT4G32350) Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:829369] identity=51.5; qcov=0.233; evalue=8.81e-40; confidence=weak
Rice	`Os02g0159200` - identity=50.4; qcov=0.2; evalue=1.28e-34; confidence=weak
GO	GO:0015031 (protein transport)
KEGG	-
Pfam	PF03398 (Ist1)
InterPro	-
eggNOG	-
NR	GeneID:131014013

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797933.1`
2	Cytosol	细胞质基质	0.60000	`XP_057797933.1`
3	Cytoskeleton	细胞骨架	0.20000	`XP_057797933.1`
4	Nucleus	细胞核	0.00000	`XP_057797933.1`
5	Chromosome	染色体	0.00000	`XP_057797933.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:29331787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr3:29331939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:29332094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C41,C56
`Chr3:29332104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:29332154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:29332281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B64,C24,C42,C6
`Chr3:29332336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr3:29332345`	`G`	`GT`	1bp_insertion	frameshift_variant	4	A16,C34,C63,C66
`Chr3:29332345`	`G`	`GT`	1bp_insertion	CDS_variant	4	A16,C34,C63,C66
`Chr3:29332376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B123,B46
`Chr3:29332384`	`T`	`TAA`	2bp_insertion	frameshift_variant	6	B130,B97,C45,C53,C57,C83
`Chr3:29332522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797933.1

649 aa

324

649

Ist1

PF03398 Ist1 15-169 aa

XP_057797934.1

584 aa

292

584

Ist1

PF03398 Ist1 2-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797933.1`	Pfam	`PF03398`	Ist1	Family	15	169	2.7e-43	148.4	Regulator of Vps4 activity in the MVB pathway
`XP_057797934.1`	Pfam	`PF03398`	Ist1	Family	2	104	4.7e-31	108.7	Regulator of Vps4 activity in the MVB pathway

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941950.1
ATTGGAAAATTAGATTTAAATTTTTTGAAAAAAAGTTGTCTTGGCCGAAGCTATAATGCGCCACACACTCCACACACACACATCACTAGCGTACAAATCCATCGCATCCCACTTCTCTTTGTACTAGCTCGGTTTAAATAGTGAAAAATTGGTAATGGCGGACCCATATTTCGCGATCCTTTATTAGCTTTCTTCGGCCTAATTAACTAAAACAAATAAAGAAGCTAGACTTCACTCAAGGCTCTCTCCACTTAAACTTT...

XM_057941951.1
ATACTTTGATCAGTTTCAGTAATCTCAAATTTGATGTTGCTGTGAACTAGATTTTGCCTGTTTGTATGTGTGTTATTATTGATAGATTTATTTATTTATTTACTTATTTTATACACATTTTTCCTCTTGATATGTATACCTCAATAATTCTAATTAGTTCGGTAGATGTCACTGTGAGCTAGAAATTGTGTGCGCGTGCGCGTGCGTTTGAGTGTTTATTTTGTACTAATAATTATTTAATTTTTTCCTCTTTTTGTCTT...

CDS

2 records

下载 CDS FASTA

LOC131014013
ATGCTCGACGGAATTTTGGGCCGTGGGTTCAGCGTCAAATGCAAATCTTTGATTAAAGCAACTGGAGCGAGGATCGCGGTGGTCCGGCGGAGAGCGGAGGCGAAGCAGAGATTCCTGAATGAAGATCTGGCCAAGCTGCTATCCAATGGCCTTGATATCAACGCCTATGGGAGGACTGAAGAGTTTCTTGCTGGAATGAATCTGTTGTCATGCTACGACTTTGTTGACCAATCTTGTGAGTATATACTAAAGCAACTTTC...

LOC131014013
ATGAATCTGTTGTCATGCTACGACTTTGTTGACCAATCTTGTGAGTATATACTAAAGCAACTTTCAAGAATGCAGAAACAAGGGGAATGCCCTGAAGATTGTAGAGAGGCTGTTGCATCCCTGATGTATGCTGCTGCAAGGTTCTCTGATTTGCCTGAACTGCGAGATCTTAGAGATATATTTCAACAGAAATATGGAAGTAGTTTAGAAGCCTTTGTTAACCAGAAGTTTGTTGAAAAAATGTCTTCGAGGCCTCCTCC...

Protein

2 records

下载 Protein FASTA

XP_057797933.1
MLDGILGRGFSVKCKSLIKATGARIAVVRRRAEAKQRFLNEDLAKLLSNGLDINAYGRTEEFLAGMNLLSCYDFVDQSCEYILKQLSRMQKQGECPEDCREAVASLMYAAARFSDLPELRDLRDIFQQKYGSSLEAFVNQKFVEKMSSRPPPKEKRLQVLQDIASEFSIKWDSKGFERRMAAPSVVSQVTEQKVDVVKQRPGFLEEKSRLKSCGQGTVWRRDEDDHQISRTKDIIKHKEKSVLKNGGNSLQGDDDNLNGG...

XP_057797934.1
MNLLSCYDFVDQSCEYILKQLSRMQKQGECPEDCREAVASLMYAAARFSDLPELRDLRDIFQQKYGSSLEAFVNQKFVEKMSSRPPPKEKRLQVLQDIASEFSIKWDSKGFERRMAAPSVVSQVTEQKVDVVKQRPGFLEEKSRLKSCGQGTVWRRDEDDHQISRTKDIIKHKEKSVLKNGGNSLQGDDDNLNGGRHRLTENKPSYPTEKCVADYKEERSNNSSHWKILDNNAPDTCSRNSNSIPNPRKGESVETLFREK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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