当前解析结果
SmilChr03G002008| 统一新 Gene ID | SmilChr03G002008 |
|---|---|
| 名称 | SmilChr03G002008 |
| 描述 | probable copper-transporting ATPase HMA5 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 29990840 - 30001619 / + |
| NCBI Gene ID | LOC131014043 |
|---|---|
| GeneID | 131014043 |
| locus_tag | - |
| NCBI Name | LOC131014043 |
| 原始查询 | LOC131014043 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable copper-transporting ATPase HMA5 |
| 产物 | probable copper-transporting ATPase HMA5 |
| Arabidopsis | AT1G63440 (HMA5)heavy metal atpase 5 [Source:NCBI gene (formerly Entrezgene);Acc:842650] identity=64.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0556000 (HMA5)- identity=62.5; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0006812 (monoatomic cation transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0019829 (ATPase-coupled monoatomic cation transmembrane transporter activity); GO:0046872 (metal ion binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00403 (HMA); PF00702 (Hydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014043 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057797951.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057797951.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057797951.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057797951.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797951.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:29990983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B82,C56,C76 |
Chr3:29991043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B31,C72,C83 |
Chr3:29991059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A24,B80,C50 |
Chr3:29991082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:29991134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C49 |
Chr3:29991739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:29991839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr3:29991958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr3:29992080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C83 |
Chr3:29992108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B20,C62,C63,C64,C66 |
Chr3:29992285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr3:29992363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797951.1PF00403
HMA 51-111 aa
PF00122
E1-E2_ATPase 428-534 aa
PF00702
Hydrolase 644-874 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797951.1 |
Pfam | PF00403 |
HMA | Domain | 51 | 111 | 6e-24 | 84.9 | Heavy-metal-associated domain |
XP_057797951.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 428 | 534 | 2.2e-23 | 82.7 | P-type ATPase actuator domain |
XP_057797951.1 |
Pfam | PF00702 |
Hydrolase | Domain | 644 | 874 | 6.7e-37 | 128.5 | haloacid dehalogenase-like hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。