当前解析结果
SmilChr01G006164| 统一新 Gene ID | SmilChr01G006164 |
|---|---|
| 名称 | SmilChr01G006164 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 77064432 - 77067053 / - |
| NCBI Gene ID | LOC131014143 |
|---|---|
| GeneID | 131014143 |
| locus_tag | - |
| NCBI Name | LOC131014143 |
| 原始查询 | LOC131014143 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT3G56370 (AT3G56370)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824804] identity=38.5; qcov=0.813; evalue=1.99e-31; confidence=medium |
| Rice | Os02g0111800 (OsCLVATA)- identity=38.2; qcov=0.771; evalue=2.69e-31; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014143 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057798006.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057798006.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057798006.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057798006.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057798006.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:77065415 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | B104,C55 |
Chr1:77065415 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | B104,C55 |
Chr1:77065417 |
CCT |
C |
2bp_deletion | frameshift_variant | 2 | B104,C55 |
Chr1:77065417 |
CCT |
C |
2bp_deletion | CDS_variant | 2 | B104,C55 |
Chr1:77065427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C55 |
Chr1:77065434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:77065562 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | A22,B104,B106,B109,B118,B124,B133,B26,B44,B45,B61,B80,C30,C36,C40,C63,C67,C70,C72,C76,D8 |
Chr1:77065565 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B125,B32,B66 |
Chr1:77065565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B32,B66 |
Chr1:77065597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr1:77065603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B119 |
Chr1:77065627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B112,B71,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798006.1PF00560
LRR_1 14-35 aa
PF00560
LRR_1 39-59 aa
PF00560
LRR_1 66-87 aa
PF13516
LRR_6 87-102 aa
PF00560
LRR_1 89-110 aa
PF00560
LRR_1 113-135 aa
PF00560
LRR_1 138-158 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 14 | 35 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 39 | 59 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 66 | 87 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
XP_057798006.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 87 | 102 | 2.9e-05 | 24.5 | Leucine Rich repeat |
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 89 | 110 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 113 | 135 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
XP_057798006.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 138 | 158 | 1.3e-19 | 66.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。