Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003251`

染色体: Chr03 坐标: 50387876-50391736 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003251`
名称	SmilChr03G003251
描述	calmodulin calcium-dependent NAD kinase-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50387876 - 50391736 / `-`

ID 对照

NCBI Gene ID	`LOC131014150`
GeneID	`131014150`
locus_tag	`-`
NCBI Name	`LOC131014150`
原始查询	`LOC131014150`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin calcium-dependent NAD kinase-like
产物	calmodulin calcium-dependent NAD kinase-like
Arabidopsis	`AT1G06750` (AT1G06750) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837186] identity=74.8; qcov=0.954; evalue=0; confidence=high
Rice	`Os05g0508800` - identity=66.7; qcov=0.868; evalue=9.19e-177; confidence=high
GO	GO:0005524 (ATP binding); GO:0016301 (kinase activity)
KEGG	-
Pfam	PF06414 (Zeta_toxin)
InterPro	-
eggNOG	-
NR	GeneID:131014150

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057798010.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057798011.1`
3	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057798010.1`
4	Nucleus	细胞核	0.00000	`XP_057798010.1`
5	Chromosome	染色体	0.00000	`XP_057798010.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50388218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:50388371`	`G`	`A`	EMS_canonical_SNV	stop_gained	68	A15,A18,A22,A24,A25,A4,B105,B109,B11,B117,B133,B15,B17,B18,B20,B24,B28,B30,B34,B36,B40,B41,B45,B49,B53,B55,B63,B65,B68,B70,B75,B77,B78,B8,B80,B89,B93,B95,C10,C11,C16,C17,C18,C19,C21,C23,C28,C30,C34,C35,C47,C48,C49,C5,C55,C6,C63,C64,C66,C67,C69,C7,C74,C75,C78,C87,D3,D8
`Chr3:50388387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr3:50388901`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B88,C45,C73
`Chr3:50390494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B31,B59,B94
`Chr3:50390811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B106,C48
`Chr3:50390817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:50391130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798010.1

515 aa

258

515

Zeta_toxin

PF06414 Zeta_toxin 211-320 aa

XP_057798011.1

509 aa

254

509

Zeta_toxin

PF06414 Zeta_toxin 205-314 aa

XP_057798012.1

453 aa

226

453

Zeta_toxin

PF06414 Zeta_toxin 211-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798010.1`	Pfam	`PF06414`	Zeta_toxin	Domain	211	320	6.6e-18	65.6	Zeta toxin
`XP_057798011.1`	Pfam	`PF06414`	Zeta_toxin	Domain	205	314	6.3e-18	65.7	Zeta toxin
`XP_057798012.1`	Pfam	`PF06414`	Zeta_toxin	Domain	211	320	5e-18	66.0	Zeta toxin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942028.1
AAAGAAATGAAACATTCACGAACATCCGTCTCCAGATTCCTAGGAACAAAAAAAAACACACACAGATACACACAGACAAACACAGGAAAAATACACTTTCTTGTCCTTCCGTAGCCATGCAAAATGAGATGAACAGCAGCGCAAAGCCAACGTACACGCAGCTCCTCGTGGCCTCCTCTGTGGGGCTAATCATAGCAGCGGCGCTGCAATACCGCATCAAGAAATTCCGCGACAAAAAGATCATACCTAGGAAGAGAATC...

XM_057942027.1
ATGATTATGTTTGATTCTCCTCCAGATGAGATGAACAGCAGCGCAAAGCCAACGTACACGCAGCTCCTCGTGGCCTCCTCTGTGGGGCTAATCATAGCAGCGGCGCTGCAATACCGCATCAAGAAATTCCGCGACAAAAAGATCATACCTAGGAAGAGAATCTCCGACACCGGCCAGGTTTTGAGCATTGAGAAGTTCTCTCACTATGTAGCCAGGCAGATGGGATTCAAAGACAGAAGAGAATGCCCACATTTGTGCAA...

CDS

3 records

下载 CDS FASTA

LOC131014150
ATGCAAAATGAGATGAACAGCAGCGCAAAGCCAACGTACACGCAGCTCCTCGTGGCCTCCTCTGTGGGGCTAATCATAGCAGCGGCGCTGCAATACCGCATCAAGAAATTCCGCGACAAAAAGATCATACCTAGGAAGAGAATCTCCGACACCGGCCAGGTTTTGAGCATTGAGAAGTTCTCTCACTATGTAGCCAGGCAGATGGGATTCAAAGACAGAAGAGAATGCCCACATTTGTGCAAGTTGGCCTCCGAATACAT...

LOC131014150
ATGATTATGTTTGATTCTCCTCCAGATGAGATGAACAGCAGCGCAAAGCCAACGTACACGCAGCTCCTCGTGGCCTCCTCTGTGGGGCTAATCATAGCAGCGGCGCTGCAATACCGCATCAAGAAATTCCGCGACAAAAAGATCATACCTAGGAAGAGAATCTCCGACACCGGCCAGGTTTTGAGCATTGAGAAGTTCTCTCACTATGTAGCCAGGCAGATGGGATTCAAAGACAGAAGAGAATGCCCACATTTGTGCAA...

Protein

3 records

下载 Protein FASTA

XP_057798010.1
MIMFDSPPDEMNSSAKPTYTQLLVASSVGLIIAAALQYRIKKFRDKKIIPRKRISDTGQVLSIEKFSHYVARQMGFKDRRECPHLCKLASEYIKKAEGCEEDMYAFFACEPDCDSLFIKLVEEFERCILSYFAFHWRHTSYMLSQVLGAEEPRRRLKNIVMQATREQRVERVTKNLKVARVFTTLVEEMKAIGLVTNDDSQCTNVMVPMAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKES...

XP_057798011.1
MQNEMNSSAKPTYTQLLVASSVGLIIAAALQYRIKKFRDKKIIPRKRISDTGQVLSIEKFSHYVARQMGFKDRRECPHLCKLASEYIKKAEGCEEDMYAFFACEPDCDSLFIKLVEEFERCILSYFAFHWRHTSYMLSQVLGAEEPRRRLKNIVMQATREQRVERVTKNLKVARVFTTLVEEMKAIGLVTNDDSQCTNVMVPMAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIYRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器