当前解析结果
SmilChr03G003248| 统一新 Gene ID | SmilChr03G003248 |
|---|---|
| 名称 | SmilChr03G003248 |
| 描述 | histone H1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 50373470 - 50374730 / + |
| NCBI Gene ID | LOC131014151 |
|---|---|
| GeneID | 131014151 |
| locus_tag | - |
| NCBI Name | LOC131014151 |
| 原始查询 | LOC131014151 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histone H1-like |
| 产物 | histone H1-like |
| Arabidopsis | AT2G30620 (AT2G30620)winged-helix DNA-binding transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817612] identity=66; qcov=0.35; evalue=6.83e-39; confidence=low |
| Rice | Os04g0253000 (H1)- identity=52.2; qcov=0.306; evalue=1.19e-25; confidence=low |
| GO | GO:0000786 (nucleosome); GO:0003690 (double-stranded DNA binding); GO:0005634 (nucleus); GO:0006334 (nucleosome assembly); GO:0030261 (chromosome condensation); GO:0030527 (structural constituent of chromatin); GO:0031492 (nucleosomal DNA binding); GO:0045910 (negative regulation of DNA recombination) |
| KEGG | - |
| Pfam | PF00538 (Linker_histone) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014151 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798013.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057798013.1 |
| 3 | Nucleoplasm | 核质 | 1.00000 | XP_057798013.1 |
| 4 | Chromatin | 染色质 | 0.60000 | XP_057798013.1 |
| 5 | Nucleolus rim | Nucleolus rim | 0.60000 | XP_057798013.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:50373622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr3:50373934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B15,B66,C22 |
Chr3:50374003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B83,C59 |
Chr3:50374120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:50374161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B88,C45 |
Chr3:50374268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:50374464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798013.1PF00538
Linker_histone 60-122 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798013.1 |
Pfam | PF00538 |
Linker_histone | Domain | 60 | 122 | 8.2e-17 | 61.9 | linker histone H1 and H5 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。