当前解析结果
SmilChr03G003253| 统一新 Gene ID | SmilChr03G003253 |
|---|---|
| 名称 | SmilChr03G003253 |
| 描述 | uncharacterized SmilChr03G003253 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 50409949 - 50419901 / - |
| NCBI Gene ID | LOC131014155 |
|---|---|
| GeneID | 131014155 |
| locus_tag | - |
| NCBI Name | LOC131014155 |
| 原始查询 | LOC131014155 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831132]; symbol=AT5G12920; hit=AT5G12920; species=arabidopsis; confidence=high |
| 产物 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831132]; symbol=AT5G12920; hit=AT5G12920; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G12920 (AT5G12920)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831132] identity=49.7; qcov=1.02; evalue=3.42e-167; confidence=high |
| Rice | Os02g0591600 (OsWD40-46)- identity=46.3; qcov=1.03; evalue=6.01e-138; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014155 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057798023.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798023.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798023.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798023.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798023.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:50410743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:50410745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:50411402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:50412017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C33 |
Chr3:50414178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:50414256 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B110 |
Chr3:50414256 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B110 |
Chr3:50417482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:50418185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr3:50418215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B134 |
Chr3:50418237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:50418250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B25,B99,C23,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。