Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003263`

染色体: Chr03 坐标: 50546541-50558684 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003263`
名称	SmilChr03G003263
描述	myosin-9-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50546541 - 50558684 / `+`

ID 对照

NCBI Gene ID	`LOC131014165`
GeneID	`131014165`
locus_tag	`-`
NCBI Name	`LOC131014165`
原始查询	`LOC131014165`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-9-like
产物	myosin-9-like
Arabidopsis	`AT1G54560` (XIE) Myosin family protein with Dil domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841898] identity=77.7; qcov=1; evalue=0; confidence=high
Rice	`Os06g0488200` - identity=78.7; qcov=1; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL)
InterPro	-
eggNOG	-
NR	GeneID:131014165

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798032.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798032.1`
3	Phragmoplast	Phragmoplast	0.20000	`XP_057798032.1`
4	Nucleus	细胞核	0.00000	`XP_057798032.1`
5	Chromosome	染色体	0.00000	`XP_057798032.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50547253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C39
`Chr3:50548920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:50549218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:50549853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:50549969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:50550648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr3:50552598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr3:50553109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr3:50553321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B5,C65,C79
`Chr3:50554775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:50555669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:50556522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798032.1

1525 aa

762

1525

Myosin_head

DIL

PF00063 Myosin_head 65-725 aa PF00612 IQ 742-760 aa PF00612 IQ 790-808 aa PF00612 IQ 837-857 aa PF01843 DIL 1343-1447 aa

XP_057798033.1

1524 aa

762

1524

Myosin_head

DIL

PF00063 Myosin_head 64-724 aa PF00612 IQ 741-759 aa PF00612 IQ 789-807 aa PF00612 IQ 836-856 aa PF01843 DIL 1342-1446 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798032.1`	Pfam	`PF00063`	Myosin_head	Domain	65	725	1.2e-255	850.8	Myosin head (motor domain)
`XP_057798032.1`	Pfam	`PF00612`	IQ	Motif	742	760	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798032.1`	Pfam	`PF00612`	IQ	Motif	790	808	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798032.1`	Pfam	`PF00612`	IQ	Motif	837	857	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798032.1`	Pfam	`PF01843`	DIL	Repeat	1343	1447	1.7e-30	106.0	DIL domain
`XP_057798033.1`	Pfam	`PF00063`	Myosin_head	Domain	64	724	1.2e-255	850.8	Myosin head (motor domain)
`XP_057798033.1`	Pfam	`PF00612`	IQ	Motif	741	759	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798033.1`	Pfam	`PF00612`	IQ	Motif	789	807	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798033.1`	Pfam	`PF00612`	IQ	Motif	836	856	1.7e-14	52.9	IQ calmodulin-binding motif
`XP_057798033.1`	Pfam	`PF01843`	DIL	Repeat	1342	1446	1.7e-30	106.0	DIL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942050.1
GCGAAACACACTGAGTCTACCCGCCAAAAACGCACACACAGTTCACAGATGTCGGATGAAGCATTCAACCCCTCTCCGACAACGTAGGATTCTCCCAGAGATGTCTCTCCCCTCCACAAATCCATTCTCCCTCCTTGATCCTAAGGTCTCACTCCCTCTACTCACAATTCCAACAAAACCATTTCCACGATTAATCAACACAGCCATTTTTCTCATATTCACTTTTTTCCTCCCACACTTTCAACATTCCCGCTTTCATG...

XM_057942049.1
ATGCAGGGTACCCCGGTTAATATCACTGTAGGTTCTCATGTCTGGGCTGAAGAACCGGAAGTTGCTTGGATTGATGGGGTGGTGTCAAAGATAAATGGAGCCGAAGTTGAAGTGGATGCATCTAACGGGAAGAAGATTGTTTCAAAATTAGCAAACATATACCCTAAAGATGAGGATGCACCTCCTGGTGGGGTTGATGACATGACCAAACTATCATATTTGCACGAGCCCGGAGTGTTGCAGAACTTAGCAGCAAGATA...

CDS

2 records

下载 CDS FASTA

LOC131014165
ATGGGTACCCCGGTTAATATCACTGTAGGTTCTCATGTCTGGGCTGAAGAACCGGAAGTTGCTTGGATTGATGGGGTGGTGTCAAAGATAAATGGAGCCGAAGTTGAAGTGGATGCATCTAACGGGAAGAAGATTGTTTCAAAATTAGCAAACATATACCCTAAAGATGAGGATGCACCTCCTGGTGGGGTTGATGACATGACCAAACTATCATATTTGCACGAGCCCGGAGTGTTGCAGAACTTAGCAGCAAGATACCA...

LOC131014165
ATGCAGGGTACCCCGGTTAATATCACTGTAGGTTCTCATGTCTGGGCTGAAGAACCGGAAGTTGCTTGGATTGATGGGGTGGTGTCAAAGATAAATGGAGCCGAAGTTGAAGTGGATGCATCTAACGGGAAGAAGATTGTTTCAAAATTAGCAAACATATACCCTAAAGATGAGGATGCACCTCCTGGTGGGGTTGATGACATGACCAAACTATCATATTTGCACGAGCCCGGAGTGTTGCAGAACTTAGCAGCAAGATA...

Protein

2 records

下载 Protein FASTA

XP_057798032.1
MQGTPVNITVGSHVWAEEPEVAWIDGVVSKINGAEVEVDASNGKKIVSKLANIYPKDEDAPPGGVDDMTKLSYLHEPGVLQNLAARYQLNEIYTYTGSILIAINPFQRLPHIYDGHMMEQYKGAPFGELSPHVFAIADMSYRAMINEKKSNSILVSGESGAGKTETTKMLMRYLAYLGGRKGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQISDPERNYHCFYL...

XP_057798033.1
MGTPVNITVGSHVWAEEPEVAWIDGVVSKINGAEVEVDASNGKKIVSKLANIYPKDEDAPPGGVDDMTKLSYLHEPGVLQNLAARYQLNEIYTYTGSILIAINPFQRLPHIYDGHMMEQYKGAPFGELSPHVFAIADMSYRAMINEKKSNSILVSGESGAGKTETTKMLMRYLAYLGGRKGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQISDPERNYHCFYLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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