Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003269`

染色体: Chr03 坐标: 50616641-50622504 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003269`
名称	SmilChr03G003269
描述	ethylene receptor 1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50616641 - 50622504 / `+`

ID 对照

NCBI Gene ID	`LOC131014172`
GeneID	`131014172`
locus_tag	`-`
NCBI Name	`LOC131014172`
原始查询	`LOC131014172`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ethylene receptor 1
产物	ethylene receptor 1
Arabidopsis	`AT1G66340` (ETR1) Signal transduction histidine kinase, hybrid-type, ethylene sensor [Source:NCBI gene (formerly Entrezgene);Acc:842951] identity=85.6; qcov=0.974; evalue=0; confidence=high
Rice	`Os03g0701700` (OS-ERS1) - identity=78; qcov=0.955; evalue=0; confidence=high
GO	GO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0005515 (protein binding); GO:0005783 (endoplasmic reticulum); GO:0005789 (endoplasmic reticulum membrane); GO:0009723 (response to ethylene); GO:0016310 (phosphorylation); GO:0038199 (ethylene receptor activity); GO:0051740 (ethylene binding)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00072 (Response_reg); PF00512 (HisKA); PF01590 (GAF); PF02518 (HATPase_c); PF25487 (ETR1_N)
InterPro	-
eggNOG	-
NR	GeneID:131014172

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057798044.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057798044.1`
3	Cytosol	细胞质基质	0.20000	`XP_057798046.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057798047.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057798046.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50620708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:50622010`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B100,B5
`Chr3:50622235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,C11,C47,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798044.1

740 aa

370

740

ETR1_N

GAF

HisKA

HATPase_c

Response_reg

PF25487 ETR1_N 17-115 aa PF01590 GAF 158-306 aa PF00512 HisKA 342-407 aa PF02518 HATPase_c 454-584 aa PF00072 Response_reg 615-727 aa

XP_057798045.1

740 aa

370

740

ETR1_N

GAF

HisKA

HATPase_c

Response_reg

PF25487 ETR1_N 17-115 aa PF01590 GAF 158-306 aa PF00512 HisKA 342-407 aa PF02518 HATPase_c 454-584 aa PF00072 Response_reg 615-727 aa

XP_057798046.1

663 aa

332

663

GAF

HisKA

HATPase_c

Response_reg

PF01590 GAF 81-229 aa PF00512 HisKA 265-330 aa PF02518 HATPase_c 377-507 aa PF00072 Response_reg 538-650 aa

XP_057798047.1

620 aa

310

620

ETR1_N

GAF

HisKA

HATPase_c

PF25487 ETR1_N 17-115 aa PF01590 GAF 158-306 aa PF00512 HisKA 342-407 aa PF02518 HATPase_c 454-584 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798044.1`	Pfam	`PF25487`	ETR1_N	Domain	17	115	1.5e-39	135.4	Ethylene receptor 1-like, N-terminal domain
`XP_057798044.1`	Pfam	`PF01590`	GAF	Domain	158	306	9.2e-16	59.3	GAF domain
`XP_057798044.1`	Pfam	`PF00512`	HisKA	Domain	342	407	4.3e-19	69.0	His Kinase A (phospho-acceptor) domain
`XP_057798044.1`	Pfam	`PF02518`	HATPase_c	Domain	454	584	2.3e-25	89.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057798044.1`	Pfam	`PF00072`	Response_reg	Domain	615	727	1.1e-12	48.8	Response regulator receiver domain
`XP_057798045.1`	Pfam	`PF25487`	ETR1_N	Domain	17	115	1.5e-39	135.4	Ethylene receptor 1-like, N-terminal domain
`XP_057798045.1`	Pfam	`PF01590`	GAF	Domain	158	306	9.2e-16	59.3	GAF domain
`XP_057798045.1`	Pfam	`PF00512`	HisKA	Domain	342	407	4.3e-19	69.0	His Kinase A (phospho-acceptor) domain
`XP_057798045.1`	Pfam	`PF02518`	HATPase_c	Domain	454	584	2.3e-25	89.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057798045.1`	Pfam	`PF00072`	Response_reg	Domain	615	727	1.1e-12	48.8	Response regulator receiver domain
`XP_057798046.1`	Pfam	`PF01590`	GAF	Domain	81	229	6.7e-16	59.7	GAF domain
`XP_057798046.1`	Pfam	`PF00512`	HisKA	Domain	265	330	3.7e-19	69.2	His Kinase A (phospho-acceptor) domain
`XP_057798046.1`	Pfam	`PF02518`	HATPase_c	Domain	377	507	1.8e-25	90.2	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057798046.1`	Pfam	`PF00072`	Response_reg	Domain	538	650	9.2e-13	49.1	Response regulator receiver domain
`XP_057798047.1`	Pfam	`PF25487`	ETR1_N	Domain	17	115	1.2e-39	135.7	Ethylene receptor 1-like, N-terminal domain
`XP_057798047.1`	Pfam	`PF01590`	GAF	Domain	158	306	5.6e-16	60.0	GAF domain
`XP_057798047.1`	Pfam	`PF00512`	HisKA	Domain	342	407	3.4e-19	69.4	His Kinase A (phospho-acceptor) domain
`XP_057798047.1`	Pfam	`PF02518`	HATPase_c	Domain	454	584	1.9e-25	90.2	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057942061.1
GCGCCATTTTGTTTCAACAATTTTGTGAGCGTATATATAGTTGGGCCCACACTCACAGTATTAATTGGCGCAAAACTCGACTTGATACATCTCCCCTTTCTAATTAAAGAAATCCCACATTCTTCTCTCTCTTACACTCACCACCCACCATGTCTTGCTCTTGCGTCTTCTTCTTCTCCTCCTGACTTCCTCCTCTCTTCATCCATCTACTCTCTTTCTCGTTCCTTAACTACAAACCAACCATCAAAATCACTCTCCTC...

XM_057942064.1
GCGCCATTTTGTTTCAACAATTTTGTGAGCGTATATATAGTTGGGCCCACACTCACAGTATTAATTGGCGCAAAACTCGACTTGATACATCTCCCCTTTCTAATTAAAGAAATCCCACATTCTTCTCTCTCTTACACTCACCACCCACCATGTCTTGCTCTTGCGTCTTCTTCTTCTCCTCCTGACTTCCTCCTCTCTTCATCCATCTACTCTCTTTCTCGTTCCTTAACTACAAACCAACCATCAAAATCACTCTCCTC...

CDS

4 records

下载 CDS FASTA

LOC131014172
ATGGAGTATTGTAACTGCTTTGAGTCACCATGGCCAGCTGATGAATTGTTGATGAAGTATCAGTATATATCGGATTTCTTCATAGCATTGGCGTACTTCTCAATCCCTTTGGAGTTAATATATTTTGTCAAGAAATCTGCTGTATTTCCTTATAGATGGGTTCTCGTGCAGTTTGGTGCTTTTATTGTTCTTTGTGGAGCAACACACCTGATAAATTTGTGGACATTTACTATGCATACAAGGACTGTGGCAGTTGTGAT...

Protein

4 records

下载 Protein FASTA

XP_057798044.1
MEYCNCFESPWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTMHTRTVAVVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELHLSYTLRHQNPVGLTVPIQLPVINQVFNTSRAVKISPISPVARLRPAGQYMPGEVVAVRVPLLHLSNFQ...

XP_057798045.1
MEYCNCFESPWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTMHTRTVAVVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELHLSYTLRHQNPVGLTVPIQLPVINQVFNTSRAVKISPISPVARLRPAGQYMPGEVVAVRVPLLHLSNFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器