Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003340`

染色体: Chr03 坐标: 51690180-51694819 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003340`
名称	SmilChr03G003340
描述	putative lysine-specific demethylase JMJ16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	51690180 - 51694819 / `-`

ID 对照

NCBI Gene ID	`LOC131014233`
GeneID	`131014233`
locus_tag	`-`
NCBI Name	`LOC131014233`
原始查询	`LOC131014233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative lysine-specific demethylase JMJ16
产物	putative lysine-specific demethylase JMJ16
Arabidopsis	`AT1G08620` (PKDM7D) Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:837384] identity=45.4; qcov=1.03; evalue=0; confidence=high
Rice	`Os05g0196500` (JMJ703) - identity=45.4; qcov=0.974; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0034647 (histone H3K4me/H3K4me2/H3K4me3 demethylase activity)
KEGG	-
Pfam	PF02373 (JmjC); PF02375 (JmjN); PF02928 (zf-C5HC2)
InterPro	-
eggNOG	-
NR	GeneID:131014233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798108.1`
2	Chromosome	染色体	0.00000	`XP_057798108.1`
3	Centromere	着丝粒	0.00000	`XP_057798108.1`
4	Chromatin	染色质	0.00000	`XP_057798108.1`
5	Telomere	端粒	0.00000	`XP_057798108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:51690457`	`GC`	`G`	1bp_deletion	frameshift_variant	101	A13,A14,A16,A20,A21,A22,A24,A25,A3,A6,B100,B102,B104,B11,B117,B12,B122,B126,B13,B130,B135,B15,B19,B20,B24,B27,B28,B37,B4,B40,B41,B42,B43,B44,B46,B48,B51,B52,B53,B54,B58,B62,B66,B68,B69,B71,B73,B74,B75,B77,B79,B80,B82,B86,B9,B93,B94,B95,B98,B99,C10,C11,C14,C15,C18,C19,C2,C20,C3,C30,C31,C32,C35,C36,C46,C48,C50,C53,C54,C55,C57,C61,C63,C64,C66,C67,C68,C69,C70,C72,C74,C78,C79,C80,C87,C9,D11,D2,D3,D5,D6
`Chr3:51690459`	`CT`	`C`	1bp_deletion	frameshift_variant	18	B139,B18,B21,B25,B56,B58,B6,B85,B9,B96,C11,C25,C44,C52,C63,C67,C69,C83
`Chr3:51690564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:51690586`	`C`	`CT`	1bp_insertion	frameshift_variant	62	A15,A16,A21,A22,A24,A3,A6,B11,B12,B122,B135,B15,B20,B24,B27,B28,B40,B41,B46,B48,B51,B52,B53,B54,B62,B66,B68,B71,B75,B77,B80,B82,B86,B89,B93,B98,B99,C10,C14,C18,C19,C2,C3,C30,C32,C36,C42,C46,C48,C61,C63,C67,C68,C74,C78,C80,C87,C9,D11,D2,D3,D5
`Chr3:51691153`	`CCA`	`C`	2bp_deletion	frameshift_variant	2	B119,C49
`Chr3:51691153`	`CCA`	`C`	2bp_deletion	CDS_variant	2	B119,C49
`Chr3:51692361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A25,B13
`Chr3:51692415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:51692702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B48,C78,D2,D5
`Chr3:51693260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B140,B38,B82,C23
`Chr3:51693309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B44
`Chr3:51693363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798108.1

699 aa

350

699

JmjN

JmjC

zf-C5HC2

PF02375 JmjN 140-173 aa PF02373 JmjC 367-480 aa PF02928 zf-C5HC2 588-638 aa

XP_057798109.1

698 aa

349

698

JmjN

JmjC

zf-C5HC2

PF02375 JmjN 139-172 aa PF02373 JmjC 366-479 aa PF02928 zf-C5HC2 587-637 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798108.1`	Pfam	`PF02375`	JmjN	Family	140	173	1.9e-17	63.5	jmjN domain
`XP_057798108.1`	Pfam	`PF02373`	JmjC	Domain	367	480	1.9e-34	119.3	JmjC domain, hydroxylase
`XP_057798108.1`	Pfam	`PF02928`	zf-C5HC2	Domain	588	638	1.6e-13	51.5	C5HC2 zinc finger
`XP_057798109.1`	Pfam	`PF02375`	JmjN	Family	139	172	1.9e-17	63.5	jmjN domain
`XP_057798109.1`	Pfam	`PF02373`	JmjC	Domain	366	479	1.9e-34	119.3	JmjC domain, hydroxylase
`XP_057798109.1`	Pfam	`PF02928`	zf-C5HC2	Domain	587	637	1.6e-13	51.5	C5HC2 zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942126.1
GAGAGAGACATGTGAAGCACAACGGCATGAATCACATTTCAGTGTTTATCCTGTCTAGTTGTGTGTCATTGATGAGAATTGAGATCATAGTTCCAGAACAACAGGGTTTTTGTTTCTGCATCGTTAGAGACTGATGGTGGGGAAGAAGAGATCTATAAAGCATGTCACGGACAACGGAGAAGAGAATCTCTCAGTTCCACCAGGATTTGTGTCATTGACATCTCTGACATTGAAGAAGATAGTAACTGGTCAGGATGCTG...

XM_057942125.1
GAGAGAGACATGTGAAGCACAACGGCATGAATCACATTTCAGTGTTTATCCTGTCTAGTTGTGTGTCATTGATGAGAATTGAGATCATAGTTCCAGAACAACAGGGTTTTTGTTTCTGCATCGTTAGAGACTGATGGTGGGGAAGAAGAGATCTATAAAGCATGTCACGGACAACGGAGAAGAGAATCTCTCAGTTCCACCAGGATTTGTGTCATTGACATCTCTGACATTGAAGAAGATAGTAACTGGTCAGGATGCTG...

CDS

2 records

下载 CDS FASTA

LOC131014233
ATGGTGGGGAAGAAGAGATCTATAAAGCATGTCACGGACAACGGAGAAGAGAATCTCTCAGTTCCACCAGGATTTGTGTCATTGACATCTCTGACATTGAAGAAGATAGTAACTGGTCAGGATGCTGCTACAGAAGGGGAGTGTGGACCTCGGTTAGTTGGTGTTCCTGTTAGCAATTCTGACATCGAAAGGTTTAAGACCTCATTCTTACAGAGACCTTGGATATCTCATGGCCAATTTGAGCATGTTCGGCATCAAGA...

Protein

2 records

下载 Protein FASTA

XP_057798108.1
MVGKKRSIKHVTDNGEENLSVPPGFVSLTSLTLKKIVTGQDAATEGECGPRLVGVPVSNSDIERFKTSFLQRPWISHGQFEHVRHQDDSEQIEVNLVKVPVGVPLPKGVIRGCEDCHDCVKVTARWHPEDSYLPGVDDAPVFRPTEEEFKDTLKYIANIRPRAESYGICRIVPPPSWRPPCLLENKEIWEASKFSTYVQKIDGLQNLLLKRKVSRLHENMETEMPKDAAILELDKAFDLVSDFERGPEFTLKSFKKYADD...

XP_057798109.1
MVGKKRSIKHVTDNGEENLSVPPGFVSLTSLTLKKIVTGQDAATEGECGPRLVGVPVSNSDIERFKTSFLQRPWISHGQFEHVRHQDDSEQIEVNLKVPVGVPLPKGVIRGCEDCHDCVKVTARWHPEDSYLPGVDDAPVFRPTEEEFKDTLKYIANIRPRAESYGICRIVPPPSWRPPCLLENKEIWEASKFSTYVQKIDGLQNLLLKRKVSRLHENMETEMPKDAAILELDKAFDLVSDFERGPEFTLKSFKKYADDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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