当前解析结果
SmilChr03G003344| 统一新 Gene ID | SmilChr03G003344 |
|---|---|
| 名称 | SmilChr03G003344 |
| 描述 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 51767952 - 51775400 / - |
| NCBI Gene ID | LOC131014238 |
|---|---|
| GeneID | 131014238 |
| locus_tag | - |
| NCBI Name | LOC131014238 |
| 原始查询 | LOC131014238 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 |
| 产物 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 |
| Arabidopsis | AT4G21150 (HAP6)ribophorin II (RPN2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827863] identity=61.5; qcov=0.997; evalue=0; confidence=high |
| Rice | Os01g0911200 (RPN2)- identity=55.1; qcov=0.996; evalue=0; confidence=high |
| GO | GO:0006487 (protein N-linked glycosylation); GO:0008250 (oligosaccharyltransferase complex); GO:0016020 (membrane) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05817 (Ribophorin_II); PF23860 (Ribophorin_II_3rd); PF23861 (Ribophorin_II_2nd); PF25147 (Ribophorin_II_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014238 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057798123.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057798123.1 |
| 3 | Endoplasmic reticulum lumen | 内质网腔 | 0.20000 | XP_057798123.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798123.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:51769218 |
CAA |
C |
2bp_deletion | frameshift_variant | 1 | B50 |
Chr3:51769218 |
CAA |
C |
2bp_deletion | CDS_variant | 1 | B50 |
Chr3:51769310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:51769543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:51771791 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C58 |
Chr3:51771791 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C58 |
Chr3:51771979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C29,C36,C39,D2 |
Chr3:51773656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B99 |
Chr3:51774200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:51775126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C23,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798123.1PF05817
Ribophorin_II 28-305 aa
PF23861
Ribophorin_II_2nd 313-417 aa
PF23860
Ribophorin_II_3rd 427-548 aa
PF25147
Ribophorin_II_C 583-683 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798123.1 |
Pfam | PF05817 |
Ribophorin_II | Repeat | 28 | 305 | 1.4e-46 | 159.8 | Ribophorin II N-terminal domain |
XP_057798123.1 |
Pfam | PF23861 |
Ribophorin_II_2nd | Domain | 313 | 417 | 5.6e-19 | 69.0 | Ribophorin II second domain |
XP_057798123.1 |
Pfam | PF23860 |
Ribophorin_II_3rd | Domain | 427 | 548 | 5.3e-36 | 124.2 | Ribophorin II third domain |
XP_057798123.1 |
Pfam | PF25147 |
Ribophorin_II_C | Domain | 583 | 683 | 8.9e-25 | 87.9 | Ribophorin_II, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。