当前解析结果
SmilChr03G003363| 统一新 Gene ID | SmilChr03G003363 |
|---|---|
| 名称 | SmilChr03G003363 |
| 描述 | long-chain-alcohol oxidase FAO2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 51977466 - 51980894 / + |
| NCBI Gene ID | LOC131014259 |
|---|---|
| GeneID | 131014259 |
| locus_tag | - |
| NCBI Name | LOC131014259 |
| 原始查询 | LOC131014259 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | long-chain-alcohol oxidase FAO2-like |
| 产物 | long-chain-alcohol oxidase FAO2-like |
| Arabidopsis | AT4G28570 (AT4G28570)Long-chain fatty alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828975] identity=58.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0621800 (HWH1)- identity=52.5; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0046577 (long-chain-alcohol oxidase activity); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | - |
| Pfam | PF00732 (GMC_oxred_N); PF00890 (FAD_binding_2); PF05199 (GMC_oxred_C); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014259 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057798154.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057798154.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057798154.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798154.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798154.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:51977754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr3:51977840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C38 |
Chr3:51978809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr3:51979620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B53,B8 |
Chr3:51979766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B105,B38,B39,C8 |
Chr3:51979874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C8 |
Chr3:51979972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B74,C44,C83 |
Chr3:51980105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:51980124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C8 |
Chr3:51980183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C38 |
Chr3:51980203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B24,B93,C81,C83 |
Chr3:51980251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B26,C40,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798154.1PF00890
FAD_binding_2 228-260 aa
PF13450
NAD_binding_8 231-259 aa
PF00732
GMC_oxred_N 275-494 aa
PF05199
GMC_oxred_C 588-716 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798154.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 228 | 260 | 1.1e-05 | 25.5 | FAD binding domain |
XP_057798154.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 231 | 259 | 9.1e-05 | 23.4 | NAD(P)-binding Rossmann-like domain |
XP_057798154.1 |
Pfam | PF00732 |
GMC_oxred_N | Domain | 275 | 494 | 1e-75 | 255.0 | GMC oxidoreductase |
XP_057798154.1 |
Pfam | PF05199 |
GMC_oxred_C | Domain | 588 | 716 | 3.1e-22 | 80.4 | GMC oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。