Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003412

染色体: Chr03 坐标: 52458654-52459965 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003412
名称SmilChr03G003412
描述uncharacterized SmilChr03G003412
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向52458654 - 52459965 / -

ID 对照

NCBI Gene IDLOC131014302
GeneID131014302
locus_tag-
NCBI NameLOC131014302
原始查询LOC131014302

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822073]; symbol=AT3G24750; hit=AT3G24750; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822073]; symbol=AT3G24750; hit=AT3G24750; species=arabidopsis; confidence=medium
ArabidopsisAT3G24750 (AT3G24750)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822073]
identity=46.8; qcov=0.815; evalue=2.96e-23; confidence=medium
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131014302

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057798218.1
2 Nucleus 细胞核 0.60000 XP_057798217.1
3 Cytoplasm 细胞质 0.40000 XP_057798217.1
4 Chromosome 染色体 0.00000 XP_057798217.1
5 Centromere 着丝粒 0.00000 XP_057798217.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:52458949 G GT 1bp_insertion frameshift_variant 39 A14,A18,A25,B105,B119,B122,B124,B128,B134,B138,B18,B28,B49,B63,B70,B75,B79,B80,B81,B83,B87,B93,B95,B99,C11,C19,C20,C27,C3,C37,C42,C47,C64,C66,C69,C70,C72,C78,C83
Chr3:52459161 G A EMS_canonical_SNV CDS_variant 2 A25,C72
Chr3:52459424 C T EMS_canonical_SNV CDS_variant 1 B104
Chr3:52459434 C T EMS_canonical_SNV CDS_variant 1 B104
Chr3:52459435 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057942234.1
CTTTTGGCCAAACAAATCGTCTCACATATTCTCTTCACTATCCACATTTTGGAATCATTTAAATTAAAAATATACGCGACTAACATGCAGGTGACCTAGCCACGCAATTTCTTGGATCAAATTAATCGCTGCACCATCATCTTCACATGCAAAATATTTTAACAATATCTATTTCATTTCATTTCATAGCAGTATTATATATAAAACAGATCCTTAAATGCCACCAATAGATGGGATCGTTCTAATCAGGTGAACACGAA...
XM_057942235.1
GTCTCACATATTCTCTTCACTATCCACATTTTGGAATCATTTAAATTAAAAATATACGCGACTAACATGCAGGTGACCTAGCCACGCAATTTCTTGGATCAAATTAATCGCTGCACCATCATCTTCACATGCAAAATATTTTAACAATATCTATTTCATTTCATTTCATAGCAGTATTATATATAAAACAGATCCTTAAATGCCACCAATAGATGGGATCGTTCTAATCAGGTGAACACGAAACGTCATAGCTAGAAGAT...

CDS

2 records

下载 CDS FASTA
LOC131014302
ATGAAGACGAAGAAAGAAGACAAGGCAGATTGTGCAGCAGCAACATCGATATCTCACGTAGGAAACAAAGTCTTACCTATAAGCGATGCAGCTCAAGCATCATCAGCAAGCAGCGGCGATCAATGTCCCAACGCAGACAACAAGAAAGAGAAGACGAAAGGCGACAAGATGAAGACCATTAGAAGGATGAAGGAGCTGCTCAAATGGGCAGCTGCTGCTAGGACTGACAAAGGAGCAAAATACATCGGTAGAAAGGTCTT...
LOC131014302
ATGAAGACGAAGAAAGAAGACAAGGCAGATTGTGCAGCAGCAACATCGATATCTCACGTAGGAAACAAAGTCTTACCTATAAGCGATGCAGCTCAAGCATCATCAGCAAGCAGCGGCGATCAATGTCCCAACGCAGACAACAAGAAAGAGAAGACGAAAGGCGACAAGATGAAGACCATTAGAAGGATGAAGGAGCTGCTCAAATGGGCAGCTGCTGCTAGGACTGACAAAGGAGCAAAATACATCGGTAGAAAGGTCTT...

Protein

2 records

下载 Protein FASTA
XP_057798217.1
MKTKKEDKADCAAATSISHVGNKVLPISDAAQASSASSGDQCPNADNKKEKTKGDKMKTIRRMKELLKWAAAARTDKGAKYIGRKVLHFRNKSTALKAVQDDDDLSNDSPKISFRWEVESCSTTSSVYSAISAVASSLRHDHILAAASLNSTPLRARPGNWITTDSECQHSITLDIN
XP_057798218.1
MKTKKEDKADCAAATSISHVGNKVLPISDAAQASSASSGDQCPNADNKKEKTKGDKMKTIRRMKELLKWAAAARTDKGAKYIGRKVLHFRNKSTALKAVQDDDDLSNDSPKISFRWEVESCSTTSSVYSAISAVASSLRHDHILAAASLNSTPLRARPGNWITTDSEFVVLEL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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