当前解析结果
SmilChr03G003437| 统一新 Gene ID | SmilChr03G003437 |
|---|---|
| 名称 | SmilChr03G003437 |
| 描述 | DNA damage-repair/toleration protein DRT100-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 52729843 - 52731348 / - |
| NCBI Gene ID | LOC131014327 |
|---|---|
| GeneID | 131014327 |
| locus_tag | - |
| NCBI Name | LOC131014327 |
| 原始查询 | LOC131014327 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA damage-repair/toleration protein DRT100-like |
| 产物 | DNA damage-repair/toleration protein DRT100-like |
| Arabidopsis | AT3G20820 (AT3G20820)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821630] identity=73.1; qcov=0.953; evalue=0; confidence=high |
| Rice | Os08g0505900 (PGIP6)- identity=61.1; qcov=0.956; evalue=2.9e-150; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014327 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057798242.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057798242.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798242.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798242.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:52730073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B53,B77,B8 |
Chr3:52730406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B18,B2,B73,C66 |
Chr3:52730415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B2 |
Chr3:52730425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B2 |
Chr3:52730432 |
TC |
T |
1bp_deletion | frameshift_variant | 16 | A10,B10,B102,B19,B2,B26,B27,B30,B63,B69,B73,B75,B87,C18,C66,C87 |
Chr3:52730436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B2 |
Chr3:52730437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B18 |
Chr3:52730445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
Chr3:52730446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B19,B30,B63 |
Chr3:52730447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B73,C66,C87 |
Chr3:52730448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B18 |
Chr3:52730449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B10,B18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798242.1PF08263
LRRNT_2 23-62 aa
PF00560
LRR_1 130-151 aa
PF00560
LRR_1 153-175 aa
PF13855
LRR_8 153-212 aa
PF13516
LRR_6 176-190 aa
PF00560
LRR_1 177-199 aa
PF00560
LRR_1 226-247 aa
PF00560
LRR_1 298-316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798242.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 23 | 62 | 3.4e-12 | 47.1 | Leucine rich repeat N-terminal domain |
XP_057798242.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 130 | 151 | 1.3e-29 | 96.6 | Leucine Rich Repeat |
XP_057798242.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 153 | 175 | 1.3e-29 | 96.6 | Leucine Rich Repeat |
XP_057798242.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 153 | 212 | 7.3e-20 | 71.2 | Leucine rich repeat |
XP_057798242.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 176 | 190 | 3e-08 | 33.8 | Leucine Rich repeat |
XP_057798242.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 177 | 199 | 1.3e-29 | 96.6 | Leucine Rich Repeat |
XP_057798242.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 226 | 247 | 1.3e-29 | 96.6 | Leucine Rich Repeat |
XP_057798242.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 298 | 316 | 1.3e-29 | 96.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。