Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003470`

染色体: Chr03 坐标: 53164961-53171918 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003470`
名称	SmilChr03G003470
描述	uncharacterized SmilChr03G003470
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53164961 - 53171918 / `+`

ID 对照

NCBI Gene ID	`LOC131014358`
GeneID	`131014358`
locus_tag	`-`
NCBI Name	`LOC131014358`
原始查询	`LOC131014358`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=high
产物	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=high
Arabidopsis	`AT3G05850` (MUG7) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=62.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0632700` - identity=40.8; qcov=0.996; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00564 (PB1); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131014358

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798294.1`
2	Chromosome	染色体	0.00000	`XP_057798294.1`
3	Centromere	着丝粒	0.00000	`XP_057798294.1`
4	Chromatin	染色质	0.00000	`XP_057798294.1`
5	Telomere	端粒	0.00000	`XP_057798294.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53166425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,A9,B82
`Chr3:53166470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B91,C16,C50,D7
`Chr3:53166693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B114
`Chr3:53166723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B59,B74,C9
`Chr3:53166745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B59,C9
`Chr3:53166909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,C47,C8
`Chr3:53166981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B62,C18,C2,C80
`Chr3:53167212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,A9,B82
`Chr3:53167293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,A9,B82
`Chr3:53167620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,B91,C16,C50,D7
`Chr3:53167840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:53167893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B35,B66,C45,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798294.1

783 aa

392

783

PB1

DBD_Tnp_Mut

MULE

SWIM

PF00564 PB1 24-93 aa PF03108 DBD_Tnp_Mut 210-274 aa PF10551 MULE 405-498 aa PF04434 SWIM 659-688 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798294.1`	Pfam	`PF00564`	PB1	Domain	24	93	4e-11	43.4	PB1 domain
`XP_057798294.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	210	274	3.7e-31	107.3	MuDR family transposase
`XP_057798294.1`	Pfam	`PF10551`	MULE	Domain	405	498	2.4e-14	54.2	MULE transposase domain
`XP_057798294.1`	Pfam	`PF04434`	SWIM	Domain	659	688	4.6e-08	33.1	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009098184.1
GGAACACCTTTCTTTTATCCACTCTTTTTTTCTCTTTCAATCTTTCTTCGAAATTCTTCGAAACTCTTTCAATCTATCTCTCTATCTATACACAATCATCACAACTCCTTTCAAACCCCCAACTCCCCTCTCCTTTTCCCAACTGTACCTTTCACAACTCAACGTTTCATTGCTGCAAAGATTCCCCTGTGCTTTCACTCCCAAATTGAATTCACCCAATTTTTCCAAAACCCTTTTATTAATTTTATCATCCCAGATCG...

XR_009098185.1
GGAACACCTTTCTTTTATCCACTCTTTTTTTCTCTTTCAATCTTTCTTCGAAATTCTTCGAAACTCTTTCAATCTATCTCTCTATCTATACACAATCATCACAACTCCTTTCAAACCCCCAACTCCCCTCTCCTTTTCCCAACTGTACCTTTCACAACTCAACGTTTCATTGCTGCAAAGATTCCCCTGTGCTTTCACTCCCAAATTGAATTCACCCAATTTTTCCAAAACCCTTTTATTAATTTTATCATCCCAGATCG...

CDS

1 records

下载 CDS FASTA

LOC131014358
ATGGTTGGGAAGAGAATTATAGCCATCTGTCAGTCAGGTGGTGAATTTGAGTCCAACCCAGAAGGTTTATTGTCTTATAGAGGTGGTGATGCTCATGCTATGGAGATTGATGATAAAATGAAGTTTAAAGATTTCAAGTTAGAGGTAGCAGAGATGTTTAGTTGCAATCTTGGTACCTTGGCCATCAAATATTTCCTTCCTGGAAATAAGAAGACCCTTATCAGCATTTCAAATGACAAAGATCTCAAGCGCATGATCAA...

Protein

1 records

下载 Protein FASTA

XP_057798294.1
MVGKRIIAICQSGGEFESNPEGLLSYRGGDAHAMEIDDKMKFKDFKLEVAEMFSCNLGTLAIKYFLPGNKKTLISISNDKDLKRMINFHNDSDSAEIYVMTEEIAAPDVSHMPGSRSSRTTLSEAEVPVDASPSMVDNIVGDINKPDLLLGAAFDVVGDTNHDEAQTEIPSEMPISSEMPISGDLPLPISFTASYDEKHTKAAQQWQNNITGVGQRFNSVHEFREALRKYAIAHQFAFKYKKNDSHRVTVKCKAEGCPWR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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