Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003482`

染色体: Chr03 坐标: 53375085-53378510 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003482`
名称	SmilChr03G003482
描述	uncharacterized SmilChr03G003482
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53375085 - 53378510 / `-`

ID 对照

NCBI Gene ID	`LOC131014371`
GeneID	`131014371`
locus_tag	`-`
NCBI Name	`LOC131014371`
原始查询	`LOC131014371`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129]; symbol=AT4G14746; hit=AT4G14746; species=arabidopsis; confidence=medium
产物	neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129]; symbol=AT4G14746; hit=AT4G14746; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G14746` (AT4G14746) neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129] identity=41.4; qcov=0.794; evalue=1.3e-37; confidence=medium
Rice	`Os11g0582000` - identity=37.9; qcov=0.711; evalue=2.41e-28; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131014371

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798312.1`
2	Nucleus	细胞核	0.00000	`XP_057798312.1`
3	Chromosome	染色体	0.00000	`XP_057798312.1`
4	Centromere	着丝粒	0.00000	`XP_057798312.1`
5	Chromatin	染色质	0.00000	`XP_057798312.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53376384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B9,C22,C25,D4
`Chr3:53376419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C8
`Chr3:53376423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C58,C71,C85
`Chr3:53376425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:53376432`	`T`	`TA`	1bp_insertion	frameshift_variant	73	A11,A13,A14,A22,A3,A8,A9,B10,B104,B105,B11,B111,B115,B118,B123,B125,B128,B13,B133,B134,B137,B138,B14,B15,B18,B19,B26,B33,B34,B41,B46,B57,B58,B61,B63,B65,B66,B70,B71,B72,B76,B79,B81,B83,B86,B88,B90,B91,B92,B98,C10,C11,C12,C13,C15,C16,C3,C38,C45,C46,C47,C50,C69,C7,C72,C73,C76,C86,D2,D5,D6,D7,D9
`Chr3:53376482`	`CA`	`C`	1bp_deletion	frameshift_variant	3	C58,C71,C85
`Chr3:53376482`	`CA`	`C`	1bp_deletion	CDS_variant	3	C58,C71,C85
`Chr3:53376491`	`G`	`A`	EMS_canonical_SNV	stop_gained	64	A1,A13,A2,A20,A25,A9,B101,B104,B11,B113,B114,B120,B124,B13,B131,B139,B14,B16,B17,B19,B2,B21,B31,B36,B4,B49,B51,B54,B56,B65,B7,B79,B83,B86,B89,B90,B92,B93,B94,B95,B96,C17,C19,C28,C29,C30,C35,C36,C38,C39,C44,C48,C5,C51,C52,C54,C59,C65,C74,C75,C87,D10,D5,D6
`Chr3:53376515`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B123
`Chr3:53376515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:53376571`	`GA`	`G`	1bp_deletion	frameshift_variant	22	A15,A16,A6,B101,B126,B127,B26,B27,B29,B34,B35,B4,B46,B6,B73,B74,C37,C43,C52,C55,C7,C8
`Chr3:53376582`	`A`	`AT`	1bp_insertion	frameshift_variant	50	A18,A21,A4,A7,B105,B106,B130,B18,B23,B25,B3,B30,B35,B39,B42,B43,B47,B48,B5,B56,B6,B60,B66,B73,B8,B80,B85,B96,B97,C17,C26,C27,C34,C4,C45,C53,C55,C56,C57,C6,C62,C64,C65,C66,C67,C77,C79,C81,C87,D1

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942330.1
AATATTAATTAAAGCAAGGGTGAAAAGTTAAAATTACTTCTCTAAACAACAGTTTTTGGTAATCTAATGACCCTGTCAACTATTAATAAGTTGTAGAAGCGCGCCATTCACAAATTAAACGCGCAGAAAAGACCCAAGGGATTGTAATGTTTGAAATTCGAATCGTGTTTAATTAAGTCGGAGCAGCAGAAGCTTCTCTAGAGAAAGAGTCAATCTATTTTTTTTTATTTTTTTTTTTCTAATTAAGTTGACACACGCAT...

XM_057942329.1
TTTTATTTTTTTTTTTCTAATTAAGTTGACACACGCATTCATTCTTGTATGTGAATATATATATATACTGCAATACTAACAATTACTTGTACCACTACTACTACTACTACTCTTGAAGTCTTTAATTAGAGATATGGCAGTCTCATATTTGGGAGTTTTTGTGGCAATTTCGCTGGTTTTGGCAGCAAAAGGAGATAACCATGTTCCTCCTAGTCTAGCTCCTTTTTTCGATGATTTATGTAAAGAGGTGGAATGTGGAA...

CDS

2 records

下载 CDS FASTA

LOC131014371
ATGGCAGTCTCATATTTGGGAGTTTTTGTGGCAATTTCGCTGGTTTTGGCAGCAAAAGGAGATAACCATGTTCCTCCTAGTCTAGCTCCTTTTTTCGATGATTTATGTAAAGAGGTGGAATGTGGAAAGGGAAGTTGCGAGGCAGCTCCAGGCTCTCCTTTCAGCTTCAAGTGCAATTGCGACCAAGGATGGAAGCGTACCCGTCTTGAGGATGAAGACGACTTAGAATTCCTTCCCTGCATCATTCCCAACTGCGACGT...

Protein

2 records

下载 Protein FASTA

XP_057798312.1
MAVSYLGVFVAISLVLAAKGDNHVPPSLAPFFDDLCKEVECGKGSCEAAPGSPFSFKCNCDQGWKRTRLEDEDDLEFLPCIIPNCDVDYSCMPAAPPLPAVPHNLSVFDPCYWVYCGEGTCTKNETRSHTCQCDSGYSNLLNVSAFPCYNDCAIGSNSCERLGLKAASATSNPNDDHNQGTRNLVLTRPQRLCLLLFLSIYKSYVFSLFRNIFYSILKSIHTQYLQNTHHLLLQIGEPNTIILTLKSHISAFLLKLMPFT...

XP_057798313.1
MAVSYLGVFVAISLVLAAKGDNHVPPSLAPFFDDLCKEVECGKGSCEAAPGSPFSFKCNCDQGWKRTRLEDEDDLEFLPCIIPNCDVDYSCMPAAPPLPAVPHNLSVFDPCYWVYCGEGTCTKNETRSHTCQCDSGYSNLLNVSAFPCYNDCAIGSNSCERLGLKAASATSNPNDDHNQAIAFSMGRFNWMAVLLATAAVAFWK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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