Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003511`

染色体: Chr03 坐标: 53716724-53721154 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003511`
名称	SmilChr03G003511
描述	uncharacterized SmilChr03G003511
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53716724 - 53721154 / `-`

ID 对照

NCBI Gene ID	`LOC131014401`
GeneID	`131014401`
locus_tag	`-`
NCBI Name	`LOC131014401`
原始查询	`LOC131014401`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=low
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=31.4; qcov=0.339; evalue=2.69e-41; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=26.2; qcov=0.305; evalue=4.24e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131014401

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798340.1`
2	Nucleus	细胞核	0.60000	`XP_057798340.1`
3	Cytosol	细胞质基质	0.20000	`XP_057798340.1`
4	Chromosome	染色体	0.00000	`XP_057798340.1`
5	Centromere	着丝粒	0.00000	`XP_057798340.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53718579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr3:53718654`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A5
`Chr3:53718654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:53718835`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B48
`Chr3:53719031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B16,B90,B92,C59
`Chr3:53719801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr3:53720001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,B91,C16,D7
`Chr3:53720617`	`TC`	`T`	1bp_deletion	frameshift_variant	14	B103,B128,B140,B21,B78,C14,C18,C21,C28,C29,C31,C49,C74,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798340.1

1137 aa

568

1137

F-box

FBA_3

FBA_1

F-box

FBA_3

FBA_1

F-box

FBA_1

FBA_3

PF00646 F-box 15-54 aa PF08268 FBA_3 129-311 aa PF07734 FBA_1 131-315 aa PF00646 F-box 390-426 aa PF08268 FBA_3 489-687 aa PF07734 FBA_1 503-698 aa PF00646 F-box 767-803 aa PF07734 FBA_1 874-1074 aa PF08268 FBA_3 875-1063 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798340.1`	Pfam	`PF00646`	F-box	Domain	15	54	5.1e-25	87.0	F-box domain
`XP_057798340.1`	Pfam	`PF08268`	FBA_3	Repeat	129	311	1.6e-57	195.6	F-box associated beta propeller domain
`XP_057798340.1`	Pfam	`PF07734`	FBA_1	Repeat	131	315	1.6e-75	254.7	F-box associated beta propeller domain
`XP_057798340.1`	Pfam	`PF00646`	F-box	Domain	390	426	5.1e-25	87.0	F-box domain
`XP_057798340.1`	Pfam	`PF08268`	FBA_3	Repeat	489	687	1.6e-57	195.6	F-box associated beta propeller domain
`XP_057798340.1`	Pfam	`PF07734`	FBA_1	Repeat	503	698	1.6e-75	254.7	F-box associated beta propeller domain
`XP_057798340.1`	Pfam	`PF00646`	F-box	Domain	767	803	5.1e-25	87.0	F-box domain
`XP_057798340.1`	Pfam	`PF07734`	FBA_1	Repeat	874	1074	1.6e-75	254.7	F-box associated beta propeller domain
`XP_057798340.1`	Pfam	`PF08268`	FBA_3	Repeat	875	1063	1.6e-57	195.6	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942357.1
TTCTGAGAAAAGAAAAACGAGATAAAAGAATTCTCTCATCTCTCTCTCTCATTCTTCCCCCTACGTCTAGGAGAAGGAACGAAGTGATTCCTTCCACTTCAGAAACCGAAATTGTGATAATGGAAAACGAAATCGAGATGATCACTGCACCACCCGGGCCATTACCCAATCTTCCGGAAGAAATAATCAAAGAAATACTTCTGAGGCTGCCCGCAAGATCACTTTGGAAATTTAGGTGTGTGTCGAAATGTTGGCTTTTC...

CDS

1 records

下载 CDS FASTA

LOC131014401
ATGGAAAACGAAATCGAGATGATCACTGCACCACCCGGGCCATTACCCAATCTTCCGGAAGAAATAATCAAAGAAATACTTCTGAGGCTGCCCGCAAGATCACTTTGGAAATTTAGGTGTGTGTCGAAATGTTGGCTTTTCTTGATTTCAAGTTATGATTTTGCCAAGGCCCATCTAAAAGTTTCAACCAAGAAAAACATTTATGAGCATGGTAGACTTACAGTTGGCACCAGTCAATCTTTCATGAATTTATATACTTG...

Protein

1 records

下载 Protein FASTA

XP_057798340.1
MENEIEMITAPPGPLPNLPEEIIKEILLRLPARSLWKFRCVSKCWLFLISSYDFAKAHLKVSTKKNIYEHGRLTVGTSQSFMNLYTCSLRPMVGNTVYTGSIYPDVDILPDVVRFDRPLRDIDSVIWLEGSCNGLVCVLESARTLILWNPTTNQYRVLPCSGTPLRFEYPRTFGFGYDEFHDDYKVVEVFHLEPGMCVMEPRANVYSLRSNCWKALLNWPNERVAIGSGVFLNEALHWLVIRARSSSDWAIVSHDLALET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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