Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003522`

染色体: Chr03 坐标: 53831736-53836179 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003522`
名称	SmilChr03G003522
描述	trehalose-phosphate phosphatase A-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53831736 - 53836179 / `+`

ID 对照

NCBI Gene ID	`LOC131014410`
GeneID	`131014410`
locus_tag	`-`
NCBI Name	`LOC131014410`
原始查询	`LOC131014410`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trehalose-phosphate phosphatase A-like
产物	trehalose-phosphate phosphatase A-like
Arabidopsis	`AT5G51460` (ATTPPA) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835220] identity=66.8; qcov=1.02; evalue=2.46e-180; confidence=high
Rice	`Os10g0553300` (OsTPP2) - identity=61.3; qcov=1.01; evalue=3.93e-162; confidence=high
GO	GO:0004805 (trehalose-phosphatase activity); GO:0005992 (trehalose biosynthetic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:131014410

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057798352.1`
2	Chloroplast stroma	叶绿体基质	0.20000	`XP_057798352.1`
3	Nucleus	细胞核	0.00000	`XP_057798352.1`
4	Chromosome	染色体	0.00000	`XP_057798352.1`
5	Centromere	着丝粒	0.00000	`XP_057798352.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53833592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B72,C25,C87,D8
`Chr3:53833595`	`TAC`	`T`	2bp_deletion	frameshift_variant	6	A18,B51,B66,B71,C18,C4
`Chr3:53833640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:53833652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C49,C63,D9
`Chr3:53833697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:53833741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,C2,C36
`Chr3:53833839`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C25,C87,D8
`Chr3:53833839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C25,C87,D8
`Chr3:53834200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,C59
`Chr3:53834401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B104,B108,C23
`Chr3:53834447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B129,B50,C33
`Chr3:53835753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798352.1

378 aa

189

378

Trehalose_PPase

PF02358 Trehalose_PPase 117-360 aa

XP_057798353.1

378 aa

189

378

Trehalose_PPase

PF02358 Trehalose_PPase 117-360 aa

XP_057798354.1

378 aa

189

378

Trehalose_PPase

PF02358 Trehalose_PPase 117-360 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798352.1`	Pfam	`PF02358`	Trehalose_PPase	Family	117	360	6e-69	232.5	Trehalose-phosphatase
`XP_057798353.1`	Pfam	`PF02358`	Trehalose_PPase	Family	117	360	6e-69	232.5	Trehalose-phosphatase
`XP_057798354.1`	Pfam	`PF02358`	Trehalose_PPase	Family	117	360	6e-69	232.5	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942369.1
TCTTTCTCTCGCTTGTTTCCCCTCACCTTCTTAAATACGTCTCTTTCTCTCTCTATATAAACCCCCTTCTTACCATAAAACGCCCCTTCTTTTCCCACCTCTGACATCTCCATTTCTGCCATAATATATATACGTACATATACATACACTTCTTCTCCGTTCTCTATATTCTTTCATTTTTGTTCATCGTTCTCTGCGATAAATCTTCGTCTGGGTTTCTGCGATTTTTCTTTTCTTTTCACGACGATCGTCGCTCTTCT...

XM_057942370.1
TCTTTCTCTCGCTTGTTTCCCCTCACCTTCTTAAATACGTCTCTTTCTCTCTCTATATAAACCCCCTTCTTACCATAAAACGCCCCTTCTTTTCCCACCTCTGACATCTCCATTTCTGCCATAATATATATACGTACATATACATACACTTCTTCTCCGTTCTCTATATTCTTTCATTTTTGTTCATCGTTCTCTGCGATAAATCTTCGTCTGGGTTTCTGCGATTTTTCTTTTCTTTTCACGACGATCGTCGCTCTTCT...

CDS

3 records

下载 CDS FASTA

LOC131014410
ATGGACCTCAAATCAGGCAGTACATCCCCTGTTCTCACCGACAACACGAGGTTAGGCATTCACTCCGGTCTGCTTCCGTACTCTCACAGTGGCTCTGCTTTCTCTCCGGCACTCTTCCTTACCATACCGAGGAAGAGACCTGGACTACTTGATGATGTGAAGTCCAGCCTGCTTGATACTATGATATCATCATCCCCGACTCATAATAAACTATTGAAAGAGTCCAACAATGAGACAGCACAAAGTGATGGTGATCTTGC...

Protein

3 records

下载 Protein FASTA

XP_057798352.1
MDLKSGSTSPVLTDNTRLGIHSGLLPYSHSGSAFSPALFLTIPRKRPGLLDDVKSSLLDTMISSSPTHNKLLKESNNETAQSDGDLAYRNWTCKYPSALASFEQIAKSANGRRIALFLDYDGTLSPIVDNPDRAFMSNAMRVAVRNVAKYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIMGPVSASHGDNRNCIKSIDKKGKEVNLFQPASEFLPMIDEVHKSLLEITKDIVGAKVENNKFCVSVHYRNVEEKSWS...

XP_057798353.1
MDLKSGSTSPVLTDNTRLGIHSGLLPYSHSGSAFSPALFLTIPRKRPGLLDDVKSSLLDTMISSSPTHNKLLKESNNETAQSDGDLAYRNWTCKYPSALASFEQIAKSANGRRIALFLDYDGTLSPIVDNPDRAFMSNAMRVAVRNVAKYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIMGPVSASHGDNRNCIKSIDKKGKEVNLFQPASEFLPMIDEVHKSLLEITKDIVGAKVENNKFCVSVHYRNVEEKSWS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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