Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003527`

染色体: Chr03 坐标: 53878008-53884224 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003527`
名称	SmilChr03G003527
描述	probable pectinesterase/pectinesterase inhibitor 59
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53878008 - 53884224 / `-`

ID 对照

NCBI Gene ID	`LOC131014414`
GeneID	`131014414`
locus_tag	`-`
NCBI Name	`LOC131014414`
原始查询	`LOC131014414`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable pectinesterase/pectinesterase inhibitor 59
产物	probable pectinesterase/pectinesterase inhibitor 59
Arabidopsis	`AT5G51490` (AT5G51490) Plant invertase/pectin methylesterase inhibitor superfamily [Source:NCBI gene (formerly Entrezgene);Acc:835223] identity=52.6; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0788400` (OsPME6) - identity=42; qcov=1.02; evalue=7.88e-129; confidence=medium
GO	GO:0030599 (pectinesterase activity); GO:0042545 (cell wall modification); GO:0046910 (pectinesterase inhibitor activity)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01095 (Pectinesterase); PF04043 (PMEI)
InterPro	-
eggNOG	-
NR	GeneID:131014414

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	1.00000	`XP_057798360.1`
2	Vacuole	液泡	0.20000	`XP_057798362.1`
3	Nucleus	细胞核	0.00000	`XP_057798360.1`
4	Chromosome	染色体	0.00000	`XP_057798360.1`
5	Centromere	着丝粒	0.00000	`XP_057798360.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53878213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,C9,D11
`Chr3:53878248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:53878249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,C9,D11
`Chr3:53878276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:53878320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B133
`Chr3:53878387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:53878417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:53878549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr3:53878554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:53878606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:53878657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C16
`Chr3:53878720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798360.1

520 aa

260

520

PMEI

Pectinesterase

PF04043 PMEI 34-172 aa PF01095 Pectinesterase 206-505 aa

XP_057798361.1

500 aa

250

500

PMEI

Pectinesterase

PF04043 PMEI 14-152 aa PF01095 Pectinesterase 186-485 aa

XP_057798362.1

487 aa

244

487

PMEI

Pectinesterase

PF04043 PMEI 2-139 aa PF01095 Pectinesterase 173-472 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798360.1`	Pfam	`PF04043`	PMEI	Domain	34	172	8.5e-21	75.4	Plant invertase/pectin methylesterase inhibitor
`XP_057798360.1`	Pfam	`PF01095`	Pectinesterase	Repeat	206	505	2.8e-130	434.1	Pectinesterase
`XP_057798361.1`	Pfam	`PF04043`	PMEI	Domain	14	152	7.9e-21	75.5	Plant invertase/pectin methylesterase inhibitor
`XP_057798361.1`	Pfam	`PF01095`	Pectinesterase	Repeat	186	485	2.5e-130	434.3	Pectinesterase
`XP_057798362.1`	Pfam	`PF04043`	PMEI	Domain	2	139	1.2e-20	75.0	Plant invertase/pectin methylesterase inhibitor
`XP_057798362.1`	Pfam	`PF01095`	Pectinesterase	Repeat	173	472	2.3e-130	434.4	Pectinesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942379.1
TCAATCGTTCGGCACGACACTTTGTCTTCCCGACTAGTTTTGTGGCGCTGTTGACAGGCTTCACTGCTTGCATCGCTAATATATATTCATTATCTCTATTGCTGTCGACATTGACCAGCTTCCTGCAAGGTAGCTTGGCAATCTGTCTTTTTACCGCCGTTCGACGTCGCTGCGTTGTTCACTGGCTTCCTGCAAGCAGCACAAGACGAGGCCAAGAACATGGAATGGTGGTGCAGCACCACCTCCCACCCGCAGCCCTG...

XM_057942378.1
ACTAAACCAATTGCTGCCTAGTCCGCCACCAAACTCCTGTGCACGTCCCAGCCGCCAATATGATTGATTGCCAAATTAATCAAGGTAAAAGTTAATTCCCCCCCTTAATCTAATACTTATACTAAGCCGCCAATATCCTTGCCGTCAAACTAAGTTCATGGGCAAGCAAGGTTTCTTCTTTCACTTGGAGGGCTCTTCAAGATAAAATTACGACAAGATCCAACCCGTTGATGAAAAGAAGAGTCGCTCTTCAAAACGAC...

CDS

3 records

下载 CDS FASTA

LOC131014414
ATGTTGCTGGCTCAAGCAGCACAAGACGAGGCCAAGAACATGGAATGGTGGTGCAGCACCACCTCCCACCCGCAGCCCTGCAACCACCACATGAAGCAATTCCACCCGAAATCCCACCAAGATTTCCGAACCATGAGCGTCGCGGCCGCCATGGAGAGGGCCAAAACCCTAGCCAGAGAGCTCAGCGGTAGCACGAGCAAGAAGATGGTTCAGCGAGAGTGCGAAGACCTCATAGACGGCACTATTCTCCATCTAAACGC...

LOC131014414
ATGGCTACTACAATCCGAAAAGTCTCCATCATACTATCAATATTCTTCATTTATCTCACACCTTGGCATGCAGCAGCAGCACAAGACGAGGCCAAGAACATGGAATGGTGGTGCAGCACCACCTCCCACCCGCAGCCCTGCAACCACCACATGAAGCAATTCCACCCGAAATCCCACCAAGATTTCCGAACCATGAGCGTCGCGGCCGCCATGGAGAGGGCCAAAACCCTAGCCAGAGAGCTCAGCGGTAGCACGAGCAA...

Protein

3 records

下载 Protein FASTA

XP_057798360.1
MATTIRKVSIILSIFFIYLTPWHAAAAQDEAKNMEWWCSTTSHPQPCNHHMKQFHPKSHQDFRTMSVAAAMERAKTLARELSGSTSKKMVQRECEDLIDGTILHLNATLQSMMSSSTRANANAASDEQTWLSAALTNIETCIAGSHELSLPEFSSPILKGNVSEMIRNCLAVNAGLLGNSAADDPGWVTDGDRKLLQDYVWAARANVTVSKDGSGQFRSIQEAINYATANRLGKKRVIVYVKRGVYEENILINRTMNKVM...

XP_057798361.1
MLLAQAAQDEAKNMEWWCSTTSHPQPCNHHMKQFHPKSHQDFRTMSVAAAMERAKTLARELSGSTSKKMVQRECEDLIDGTILHLNATLQSMMSSSTRANANAASDEQTWLSAALTNIETCIAGSHELSLPEFSSPILKGNVSEMIRNCLAVNAGLLGNSAADDPGWVTDGDRKLLQDYVWAARANVTVSKDGSGQFRSIQEAINYATANRLGKKRVIVYVKRGVYEENILINRTMNKVMLVGDGVRNTIITGNRSSSAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器