Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003546`

染色体: Chr03 坐标: 54095789-54099966 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003546`
名称	SmilChr03G003546
描述	chloride conductance regulatory protein ICln
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54095789 - 54099966 / `-`

ID 对照

NCBI Gene ID	`LOC131014428`
GeneID	`131014428`
locus_tag	`-`
NCBI Name	`LOC131014428`
原始查询	`LOC131014428`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chloride conductance regulatory protein ICln
产物	chloride conductance regulatory protein ICln
Arabidopsis	`AT5G62290` (AT5G62290) nucleotide-sensitive chloride conductance regulator (ICln) family protein [Source:NCBI gene (formerly Entrezgene);Acc:836350] identity=58.7; qcov=1; evalue=3.45e-81; confidence=high
Rice	`Os03g0249300` - identity=48.5; qcov=1.03; evalue=3.36e-67; confidence=high
GO	GO:0000387 (spliceosomal snRNP assembly); GO:0005681 (spliceosomal complex); GO:0005829 (cytosol); GO:0005886 (plasma membrane); GO:0006821 (chloride transport); GO:0006884 (cell volume homeostasis); GO:0034709 (methylosome); GO:0034715 (pICln-Sm protein complex); GO:0045292 (mRNA cis splicing, via spliceosome)
KEGG	-
Pfam	PF03517 (Voldacs)
InterPro	-
eggNOG	-
NR	GeneID:131014428

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798391.1`
2	Cytoplasm	细胞质	1.00000	`XP_057798391.1`
3	Cytosol	细胞质基质	1.00000	`XP_057798391.1`
4	Nucleoplasm	核质	0.60000	`XP_057798391.1`
5	Chromosome	染色体	0.00000	`XP_057798391.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54096511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:54098502`	`GCC`	`G`	2bp_deletion	frameshift_variant	5	B24,B47,B69,C14,C63
`Chr3:54098502`	`GCC`	`G`	2bp_deletion	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098507`	`A`	`ATG`	2bp_insertion	frameshift_variant	5	B24,B47,B69,C14,C63
`Chr3:54098507`	`A`	`ATG`	2bp_insertion	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098524`	`A`	`AC`	1bp_insertion	frameshift_variant	5	B24,B47,B69,C14,C63
`Chr3:54098524`	`A`	`AC`	1bp_insertion	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098525`	`A`	`ATT`	2bp_insertion	frameshift_variant	5	B24,B47,B69,C14,C63
`Chr3:54098525`	`A`	`ATT`	2bp_insertion	CDS_variant	5	B24,B47,B69,C14,C63
`Chr3:54098637`	`T`	`TTA`	2bp_insertion	frameshift_variant	4	B107,B134,B16,B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798391.1

231 aa

116

231

Voldacs

PF03517 Voldacs 51-173 aa

XP_057798392.1

229 aa

114

229

Voldacs

PF03517 Voldacs 51-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798391.1`	Pfam	`PF03517`	Voldacs	Domain	51	173	2.7e-27	96.3	Regulator of volume decrease after cellular swelling
`XP_057798392.1`	Pfam	`PF03517`	Voldacs	Domain	51	173	2.6e-27	96.4	Regulator of volume decrease after cellular swelling

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942408.1
CCCCGCCAAACCCGCCGCCCACCATTTCTTTTTCTTTTTCTTCTCTCCTCCATTCTCTGCCAAGGTTCTCTTCCAGATTTCGTTTTTATTTTATTTTATGGGCGCGTGATTCTCACGTAGAAGCCCATTTCTCCTTCGTGCCTCGACACCAAGCTTCGTTCCGCCCTCGAGCCATACAGCTGCGCCAGCCCGCCACCCTGCTCTTCACGCCAGCTCGTTTAGGCACAATTCGGGGATAATGATTTGCATCTTATAAGTCT...

XM_057942409.1
CCGCCAAACCCGCCGCCCACCATTTCTTTTTCTTTTTCTTCTCTCCTCCATTCTCTGCCAAGGTTCTCTTCCAGATTTCGTTTTTATTTTATTTTATGGGCGCGTGATTCTCACGTAGAAGCCCATTTCTCCTTCGTGCCTCGACACCAAGCTTCGTTCCGCCCTCGAGCCATACAGCTGCGCCAGCCCGCCACCCTGCTCTTCACGCCAGCTCGTTTAGGCACAATTCGGGGATAATGATTTGCATCTTATAAGTCTTA...

CDS

2 records

下载 CDS FASTA

LOC131014428
ATGGCCTCTGCGATTCGACTGGTGACTGAAAGAATTGGCGATGGCGTGGGACAACCATTTGTTGACGCCAATCACGGCGAGGAGCTAATGCACGTGCAGCACGACGTCTCTATCGTCCTTGGCAGCAGCAGCCGGCCGCCCGAGTCCCCCGGCACACTCTACATCACCACCAGGCAAGTAGTTTGGTTGAGCGACTCGGATAGGGCGAAAGGCTATGCCGTGGACTTCATTTCGGTGTCGCTTCACGCTGTGTCCAGAGA...

Protein

2 records

下载 Protein FASTA

XP_057798391.1
MASAIRLVTERIGDGVGQPFVDANHGEELMHVQHDVSIVLGSSSRPPESPGTLYITTRQVVWLSDSDRAKGYAVDFISVSLHAVSRDPEAYPSPCIYAQIENGAEEDELEDSESESDDTLNLSKITEMRFVPSDPNQLDTLFAVFCECAELNPDPTEEEGSENNWIFSANQLEFNAAEDDDSEWAAHQNPAHPIGANGNLDLAHAVVQLQINDRRFEDAEEMEQDSKNGHL

XP_057798392.1
MASAIRLVTERIGDGVGQPFVDANHGEELMHVQHDVSIVLGSSSRPPESPGTLYITTRQVVWLSDSDRAKGYAVDFISVSLHAVSRDPEAYPSPCIYAQIENGAEEDELEDSESESDDTLNLSKITEMRFVPSDPNQLDTLFAVFCECAELNPDPTEEEGSENNWIFSANQLEFNAAEDDDSEWAAHQNPAHPIGANGNLDLAHAVVQINDRRFEDAEEMEQDSKNGHL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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