Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003550`

染色体: Chr03 坐标: 54155599-54159025 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003550`
名称	SmilChr03G003550
描述	somatic embryogenesis receptor kinase 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54155599 - 54159025 / `+`

ID 对照

NCBI Gene ID	`LOC131014432`
GeneID	`131014432`
locus_tag	`-`
NCBI Name	`LOC131014432`
原始查询	`LOC131014432`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	somatic embryogenesis receptor kinase 2
产物	somatic embryogenesis receptor kinase 2
Arabidopsis	`AT5G51560` (AT5G51560) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835230] identity=62.9; qcov=0.895; evalue=0; confidence=high
Rice	`Os06g0134700` - identity=59.2; qcov=0.905; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131014432

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798396.1`
2	Nucleus	细胞核	0.00000	`XP_057798396.1`
3	Chromosome	染色体	0.00000	`XP_057798396.1`
4	Centromere	着丝粒	0.00000	`XP_057798396.1`
5	Chromatin	染色质	0.00000	`XP_057798396.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54155774`	`GTA`	`G`	2bp_deletion	frameshift_variant	108	A1,A14,A2,A22,A25,A3,A7,A9,B10,B101,B103,B105,B106,B107,B108,B109,B111,B114,B117,B119,B12,B120,B121,B123,B124,B126,B127,B132,B133,B14,B18,B19,B25,B29,B3,B30,B33,B38,B39,B40,B41,B47,B49,B5,B52,B53,B55,B56,B59,B6,B63,B65,B67,B69,B7,B70,B72,B73,B74,B76,B78,B8,B81,B85,B89,B9,B90,B91,B92,B95,B96,B98,C10,C11,C13,C15,C16,C17,C2,C20,C24,C32,C34,C36,C37,C38,C39,C4,C40,C41,C46,C47,C49,C56,C58,C61,C65,C67,C68,C69,C71,C72,C74,C8,C82,C85,D7,D9
`Chr3:54155778`	`G`	`GTA`	2bp_insertion	frameshift_variant	5	A24,B42,B43,B44,B82
`Chr3:54155778`	`G`	`GTA`	2bp_insertion	CDS_variant	5	A24,B42,B43,B44,B82
`Chr3:54155781`	`T`	`TG`	1bp_insertion	frameshift_variant	160	A10,A11,A13,A15,A16,A19,A2,A20,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B104,B105,B110,B112,B114,B120,B121,B123,B125,B127,B129,B13,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B2,B20,B21,B23,B26,B27,B28,B31,B32,B34,B36,B37,B4,B40,B41,B44,B45,B46,B48,B5,B50,B51,B52,B53,B54,B56,B58,B59,B60,B61,B62,B63,B64,B69,B7,B71,B8,B81,B82,B83,B84,B86,B87,B89,B93,B94,B96,B97,B98,B99,C1,C11,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C24,C25,C27,C29,C30,C31,C33,C34,C35,C38,C40,C42,C43,C44,C48,C5,C50,C51,C54,C55,C57,C58,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C73,C75,C77,C78,C79,C80,C81,C83,C84,C85,C87,C9,D10,D11,D3,D4,D5,D6,D8,D9
`Chr3:54155784`	`TGA`	`T`	2bp_deletion	frameshift_variant	5	B127,B40,B67,C46,C50
`Chr3:54155784`	`TGA`	`T`	2bp_deletion	CDS_variant	5	B127,B40,B67,C46,C50
`Chr3:54155858`	`C`	`CAA`	2bp_insertion	frameshift_variant	180	A1,A10,A11,A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B100,B104,B105,B107,B108,B110,B112,B114,B118,B120,B121,B123,B125,B127,B129,B13,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B2,B20,B21,B23,B24,B26,B27,B28,B3,B31,B32,B34,B36,B37,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B63,B64,B66,B69,B7,B71,B76,B8,B81,B82,B83,B84,B86,B87,B89,B9,B93,B94,B96,B97,B98,C1,C11,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C29,C30,C31,C33,C34,C35,C38,C40,C41,C42,C43,C44,C48,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C73,C75,C77,C78,C79,C80,C81,C83,C84,C85,C87,C9,D10,D3,D4,D5,D6,D8,D9
`Chr3:54155865`	`C`	`CA`	1bp_insertion	frameshift_variant	8	B34,B37,B63,B83,C48,C64,C66,D6
`Chr3:54155877`	`TA`	`T`	1bp_deletion	frameshift_variant	17	A18,A21,A4,B100,B113,B126,B24,B33,B35,B42,B43,B57,C16,C45,C52,D1,D2
`Chr3:54155886`	`CCT`	`C`	2bp_deletion	frameshift_variant	180	A1,A10,A11,A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B100,B104,B105,B107,B108,B110,B112,B114,B118,B120,B121,B123,B125,B127,B129,B13,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B2,B20,B21,B23,B24,B26,B27,B28,B3,B31,B32,B34,B36,B37,B4,B40,B41,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B63,B64,B66,B69,B7,B71,B8,B81,B82,B83,B84,B86,B87,B88,B89,B9,B93,B94,B96,B97,B98,C1,C11,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C29,C30,C31,C33,C34,C35,C38,C40,C41,C42,C43,C44,C48,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C73,C75,C77,C78,C79,C80,C81,C82,C83,C84,C85,C87,C9,D10,D11,D3,D4,D5,D6,D8,D9
`Chr3:54156000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:54156003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,B51,B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798396.1

726 aa

363

726

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 76-116 aa PF00560 LRR_1 169-190 aa PF00560 LRR_1 192-214 aa PF00560 LRR_1 265-286 aa PF00069 Pkinase 460-721 aa PF07714 PK_Tyr_Ser-Thr 462-723 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798396.1`	Pfam	`PF08263`	LRRNT_2	Family	76	116	4e-08	34.1	Leucine rich repeat N-terminal domain
`XP_057798396.1`	Pfam	`PF00560`	LRR_1	Repeat	169	190	1.8e-14	51.5	Leucine Rich Repeat
`XP_057798396.1`	Pfam	`PF00560`	LRR_1	Repeat	192	214	1.8e-14	51.5	Leucine Rich Repeat
`XP_057798396.1`	Pfam	`PF00560`	LRR_1	Repeat	265	286	1.8e-14	51.5	Leucine Rich Repeat
`XP_057798396.1`	Pfam	`PF00069`	Pkinase	Domain	460	721	4.5e-28	99.1	Protein kinase domain
`XP_057798396.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	462	723	2.8e-40	139.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942413.1
TAACAAACCAAAGCACTCATCTTTATATCTCAAAACATAAAAGCCTTTTCCGAATTGAACAGAAACGTGAGCTTTTGCTGTGTACCTTGTCTTGATTCTCTTCTTTTTAAACAAAAATTTGATTCGGCCAAAACAAGACACGCACCAACAAACCTCTCTCATCTCATCAGTGTGTGTATGTGTTGTGAGAGAGAGAGAGAGTCTACCTGCACTACACGCCTTGAACACCGAGAATCACACAACACAAGCCATATTATTTC...

CDS

1 records

下载 CDS FASTA

LOC131014432
ATGTGTTGTGAGAGAGAGAGAGAGTCTACCTGCACTACACGCCTTGAACACCGAGAATCACACAACACAAGCCATATTATTTCAAAAAACAAGAACCAACATAAACACTACCTCTCACACTCATTGGAAGCAAAAACGCAACAAAACCTGCATACCTCTCTGAATTGGAACATGGGTTTTTCTCCCTTGCCGTTTCTGCTCTCTCTCCTGCTCACGTTCTCCGCCGCCGACGAGCTCACGTCGCTGCTGGACCTGAAAGC...

Protein

1 records

下载 Protein FASTA

XP_057798396.1
MCCERERESTCTTRLEHRESHNTSHIISKNKNQHKHYLSHSLEAKTQQNLHTSLNWNMGFSPLPFLLSLLLTFSAADELTSLLDLKASLDPENLHLGSWVVSGDPCGGTFEGVACNEKKQVANITLQGKGLAGKLSPAVGGLLHLTGLYLHYNSLYGEIPVELANLTELTDLYLNVNNLSGEIPPELGNMQNLQVLQLCYNQLTGSIPTQLGSLKKLNVLALQSNLLSGAIPARLGNLGVLMRLDLSFNRLFGSIPTKLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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