当前解析结果
SmilChr03G003562| 统一新 Gene ID | SmilChr03G003562 |
|---|---|
| 名称 | SmilChr03G003562 |
| 描述 | 65-kDa microtubule-associated protein 3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 54260703 - 54265395 / - |
| NCBI Gene ID | LOC131014443 |
|---|---|
| GeneID | 131014443 |
| locus_tag | - |
| NCBI Name | LOC131014443 |
| 原始查询 | LOC131014443 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 65-kDa microtubule-associated protein 3 |
| 产物 | 65-kDa microtubule-associated protein 3 |
| Arabidopsis | AT5G51600 (PLE)Microtubule associated protein (MAP65/ASE1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835234] identity=58.6; qcov=0.988; evalue=0; confidence=high |
| Rice | Os01g0685900 (P0478H03.31-1)- identity=54.5; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF03999 (MAP65_ASE1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014443 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798404.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057798404.1 |
| 3 | Spindle | Spindle | 1.00000 | XP_057798404.1 |
| 4 | Centromere | 着丝粒 | 0.80000 | XP_057798404.1 |
| 5 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057798404.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:54261796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:54262413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,C85 |
Chr3:54263309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B42,B43,B44,B82 |
Chr3:54263911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,D10 |
Chr3:54263924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:54264236 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B117,B54,C23,C82 |
Chr3:54264236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B54,C23,C82 |
Chr3:54264296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B117,B54,C82 |
Chr3:54264384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B117,B54,C23,C35,C82 |
Chr3:54264409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:54264413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B117,B54,C23,C35,C82 |
Chr3:54264433 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B117,B54,C23,C35,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798404.1PF03999
MAP65_ASE1 18-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798404.1 |
Pfam | PF03999 |
MAP65_ASE1 | Family | 18 | 508 | 9.1e-110 | 368.3 | Microtubule associated protein (MAP65/ASE1 family) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。