Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003578`

染色体: Chr03 坐标: 54391521-54397746 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003578`
名称	SmilChr03G003578
描述	protein TPX2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54391521 - 54397746 / `+`

ID 对照

NCBI Gene ID	`LOC131014460`
GeneID	`131014460`
locus_tag	`-`
NCBI Name	`LOC131014460`
原始查询	`LOC131014460`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein TPX2-like
产物	protein TPX2-like
Arabidopsis	`AT4G22860` (AT4G22860) Cell cycle regulated microtubule associated protein [Source:NCBI gene (formerly Entrezgene);Acc:828385] identity=34.7; qcov=0.89; evalue=1.07e-33; confidence=low
Rice	`Os06g0130200` - identity=25.8; qcov=1.14; evalue=4.24e-17; confidence=low
GO	GO:0005880 (nuclear microtubule); GO:0008017 (microtubule binding); GO:0030295 (protein kinase activator activity); GO:0032147 (activation of protein kinase activity); GO:0060236 (regulation of mitotic spindle organization); GO:0072686 (mitotic spindle); GO:0090307 (mitotic spindle assembly)
KEGG	-
Pfam	PF12214 (TPX2_importin)
InterPro	-
eggNOG	-
NR	GeneID:131014460

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057798419.1`
2	Spindle	Spindle	1.00000	`XP_057798419.1`
3	Nucleus	细胞核	0.80000	`XP_057798419.1`
4	Spindle pole	Spindle pole	0.60000	`XP_057798419.1`
5	Chromosome	染色体	0.60000	`XP_057798420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54392144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr3:54393002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:54393943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:54394084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,D11
`Chr3:54395034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:54395153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B129,B50,C33
`Chr3:54395184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798419.1

407 aa

204

407

TPX2_importin

PF12214 TPX2_importin 226-326 aa

XP_057798420.1

392 aa

196

392

TPX2_importin

PF12214 TPX2_importin 226-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798419.1`	Pfam	`PF12214`	TPX2_importin	Family	226	326	4.9e-17	63.3	Cell cycle regulated microtubule associated protein
`XP_057798420.1`	Pfam	`PF12214`	TPX2_importin	Family	226	326	7.2e-17	62.7	Cell cycle regulated microtubule associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942436.1
CCAATGAGCACGAGAAGTTCGCATTGTCATCACAAAAGCTCAATCATTTCCAAACAAATACATTCTCTCCTCCTCTCATCCCTCCTTGCCGTCGTCGAAATCTCCGTTGCGTTTGTTTTCCGAGAGAAGCAGGACTCAACGATTTCCTCTAACAAAACCAGCATGGAACAATAGGCGAAATCGACCACAAATGGAGGATTTTGTTGAAGACTGTCACGTCGAGATTGACGAGGAGTACGAGTTCGACGCCTCTCAGTTCT...

XM_057942437.1
CAATGAGCACGAGAAGTTCGCATTGTCATCACAAAAGCTCAATCATTTCCAAACAAATACATTCTCTCCTCCTCTCATCCCTCCTTGCCGTCGTCGAAATCTCCGTTGCGTTTGTTTTCCGAGAGAAGCAGGACTCAACGATTTCCTCTAACAAAACCAGCATGGAACAATAGGCGAAATCGACCACAAATGGAGGATTTTGTTGAAGACTGTCACGTCGAGATTGACGAGGAGTACGAGTTCGACGCCTCTCAGTTCTT...

CDS

2 records

下载 CDS FASTA

LOC131014460
ATGGAGGATTTTGTTGAAGACTGTCACGTCGAGATTGACGAGGAGTACGAGTTCGACGCCTCTCAGTTCTTCGATTTCACGAGGCCCGAGGGTGATTCCGAGATTGAGGAGGTTGAGCGCTGGTTCCAAGTTTCTGGAGATTATCCCAATTCTCCTTTTATTGTGCAGTTGAATTTAGAGAAAATACTGCCTGCGCCAGCTTCGCCCAGCTCTTGTAAATCATCAAAACCCAGAAAAGGCACCAAGTCGACTAGCAGCAG...

Protein

2 records

下载 Protein FASTA

XP_057798419.1
MEDFVEDCHVEIDEEYEFDASQFFDFTRPEGDSEIEEVERWFQVSGDYPNSPFIVQLNLEKILPAPASPSSCKSSKPRKGTKSTSSSSDTDSRHGFPPSKKNAKVKGNVAVEDAAKPKTKPSHNLSQPRSANFMEPTASHLAKQNAVLHDNQQSSHLCTRFQRTQAKQDDKSSIGSEKKSSIGSEKKSSIGSENHATKRQKLETGFLKKGSYLKHKFSLSHKSSKKATVPREPELGTLFRSQRRRSKNSSASSETESQKS...

XP_057798420.1
MEDFVEDCHVEIDEEYEFDASQFFDFTRPEGDSEIEEVERWFQVSGDYPNSPFIVQLNLEKILPAPASPSSCKSSKPRKGTKSTSSSSDTDSRHGFPPSKKNAKVKGNVAVEDAAKPKTKPSHNLSQPRSANFMEPTASHLAKQNAVLHDNQQSSHLCTRFQRTQAKQDDKSSIGSEKKSSIGSEKKSSIGSENHATKRQKLETGFLKKGSYLKHKFSLSHKSSKKATVPREPELGTLFRSQRRRSKNSSASSETESQKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器