当前解析结果
SmilChr03G003599| 统一新 Gene ID | SmilChr03G003599 |
|---|---|
| 名称 | SmilChr03G003599 |
| 描述 | subtilisin-like protease SBT1.3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 54621576 - 54624266 / + |
| NCBI Gene ID | LOC131014476 |
|---|---|
| GeneID | 131014476 |
| locus_tag | - |
| NCBI Name | LOC131014476 |
| 原始查询 | LOC131014476 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease SBT1.3 |
| 产物 | subtilisin-like protease SBT1.3 |
| Arabidopsis | AT5G51750 (SBT1.3)subtilase 1.3 [Source:NCBI gene (formerly Entrezgene);Acc:835249] identity=70.2; qcov=0.99; evalue=0; confidence=high |
| Rice | Os04g0573300 (OsSub45)- identity=66.3; qcov=0.892; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014476 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057798453.1 |
| 2 | Secreted | 分泌到胞外 | 0.60000 | XP_057798453.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057798453.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798453.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798453.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:54621982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:54622031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,D2 |
Chr3:54622123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr3:54622306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:54622354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr3:54622420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr3:54622525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:54622634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B37,B59 |
Chr3:54623086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr3:54623297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B130,B67,C46 |
Chr3:54623490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B26 |
Chr3:54623493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B98,C18,C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798453.1PF05922
Inhibitor_I9 27-110 aa
PF00082
Peptidase_S8 139-592 aa
PF02225
PA 377-466 aa
PF17766
fn3_6 667-765 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798453.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 27 | 110 | 2.3e-23 | 83.4 | Peptidase inhibitor I9 |
XP_057798453.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 139 | 592 | 8.1e-54 | 183.6 | Subtilase family |
XP_057798453.1 |
Pfam | PF02225 |
PA | Domain | 377 | 466 | 1.9e-13 | 51.1 | PA domain |
XP_057798453.1 |
Pfam | PF17766 |
fn3_6 | Domain | 667 | 765 | 3.1e-25 | 89.0 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。