当前解析结果
SmilChr03G003690| 统一新 Gene ID | SmilChr03G003690 |
|---|---|
| 名称 | SmilChr03G003690 |
| 描述 | BAG family molecular chaperone regulator 1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 55838321 - 55839949 / - |
| NCBI Gene ID | LOC131014556 |
|---|---|
| GeneID | 131014556 |
| locus_tag | - |
| NCBI Name | LOC131014556 |
| 原始查询 | LOC131014556 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BAG family molecular chaperone regulator 1-like |
| 产物 | BAG family molecular chaperone regulator 1-like |
| Arabidopsis | AT5G07220 (BAG3)BCL-2-associated athano 3 [Source:NCBI gene (formerly Entrezgene);Acc:830613] identity=64.1; qcov=0.802; evalue=2.54e-92; confidence=high |
| Rice | Os09g0524800 (OsBAG1)- identity=61.8; qcov=0.794; evalue=2.16e-86; confidence=high |
| GO | GO:0000774 (adenyl-nucleotide exchange factor activity); GO:0005737 (cytoplasm); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF02179 (BAG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014556 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057798544.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057798544.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057798544.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057798544.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798544.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:55838591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B112,C58,C85 |
Chr3:55838990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr3:55839359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B90 |
Chr3:55839373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B90,C9 |
Chr3:55839375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B6,B60,C10,C19,C2 |
Chr3:55839383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B78,B98,C49 |
Chr3:55839397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,C52,D4 |
Chr3:55839401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B139,B60,C19,C8 |
Chr3:55839415 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | C66 |
Chr3:55839415 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798544.1PF02179
BAG 137-211 aa
XP_057798545.1PF02179
BAG 137-211 aa
XP_057798546.1PF02179
BAG 137-211 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798544.1 |
Pfam | PF02179 |
BAG | Family | 137 | 211 | 5e-13 | 50.1 | BAG domain |
XP_057798545.1 |
Pfam | PF02179 |
BAG | Family | 137 | 211 | 5e-13 | 50.1 | BAG domain |
XP_057798546.1 |
Pfam | PF02179 |
BAG | Family | 137 | 211 | 5e-13 | 50.1 | BAG domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。