当前解析结果
SmilChr01G002232| 统一新 Gene ID | SmilChr01G002232 |
|---|---|
| 名称 | SmilChr01G002232 |
| 描述 | proteasome subunit alpha type-4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 38799005 - 38801879 / + |
| NCBI Gene ID | LOC131014558 |
|---|---|
| GeneID | 131014558 |
| locus_tag | - |
| NCBI Name | LOC131014558 |
| 原始查询 | LOC131014558 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proteasome subunit alpha type-4-like |
| 产物 | proteasome subunit alpha type-4-like |
| Arabidopsis | AT3G22110 (PAC1)20S proteasome alpha subunit C1 [Source:NCBI gene (formerly Entrezgene);Acc:821774] identity=83.1; qcov=1; evalue=3.69e-160; confidence=high |
| Rice | Os06g0167600- identity=78; qcov=1.01; evalue=9.8e-151; confidence=high |
| GO | GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0005839 (proteasome core complex); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0019773 (proteasome core complex, alpha-subunit complex) |
| KEGG | smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00227 (Proteasome); PF10584 (Proteasome_A_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014558 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798554.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057798554.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057798554.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798554.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798554.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798554.1PF10584
Proteasome_A_N 5-27 aa
PF00227
Proteasome 30-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798554.1 |
Pfam | PF10584 |
Proteasome_A_N | Family | 5 | 27 | 1.7e-13 | 50.6 | Proteasome subunit A N-terminal signature |
XP_057798554.1 |
Pfam | PF00227 |
Proteasome | Domain | 30 | 215 | 1.4e-59 | 201.6 | Proteasome subunit |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。