Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003696`

染色体: Chr03 坐标: 55892572-55902658 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003696`
名称	SmilChr03G003696
描述	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	55892572 - 55902658 / `+`

ID 对照

NCBI Gene ID	`LOC131014563`
GeneID	`131014563`
locus_tag	`-`
NCBI Name	`LOC131014563`
原始查询	`LOC131014563`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
产物	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Arabidopsis	`AT3G11540` (SPY) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820327] identity=84.3; qcov=0.905; evalue=0; confidence=high
Rice	`Os08g0559300` (SPY) - identity=76.5; qcov=0.966; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	smil00514 (Other types of O-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF00515 (TPR_1); PF07719 (TPR_2); PF10373 (EST1_DNA_bind); PF13174 (TPR_6); PF13176 (TPR_7); PF13181 (TPR_8); PF13374 (TPR_10); PF13414 (TPR_11); PF13424 (TPR_12); PF13431 (TPR_17); PF13432 (TPR_16); PF13844 (Glyco_transf_41)
InterPro	-
eggNOG	-
NR	GeneID:131014563

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057798558.1`
2	Cytoplasm	细胞质	0.80000	`XP_057798558.1`
3	Nucleus	细胞核	0.40000	`XP_057798558.1`
4	Chromosome	染色体	0.00000	`XP_057798558.1`
5	Centromere	着丝粒	0.00000	`XP_057798558.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:55893356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B104
`Chr3:55894518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B129,B50,B78,C33
`Chr3:55894640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:55894772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B58,C31
`Chr3:55894867`	`T`	`TG`	1bp_insertion	frameshift_variant	57	A13,A14,A23,A3,A4,A9,B109,B112,B125,B130,B135,B21,B22,B27,B29,B37,B40,B50,B51,B58,B61,B63,B64,B72,B73,B76,B77,B80,B85,B87,B89,B91,C11,C12,C13,C18,C19,C21,C27,C37,C39,C42,C46,C47,C48,C5,C53,C59,C67,C69,C7,C75,C76,C81,C84,C86,D4
`Chr3:55895006`	`G`	`GT`	1bp_insertion	frameshift_variant	5	B38,B72,B82,B9,C66
`Chr3:55895006`	`G`	`GT`	1bp_insertion	CDS_variant	5	B38,B72,B82,B9,C66
`Chr3:55895010`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B38,B82,C66
`Chr3:55895014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B82,C66
`Chr3:55895020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B82,C66
`Chr3:55895022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B82,B9,C66
`Chr3:55895065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B28,B51,B82,B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798558.1

935 aa

468

935

TPR_8

TPR_17

TPR_1

TPR_8

TPR_16

EST1_DNA_bind

TPR_10

TPR_2

TPR_8

TPR_1

TPR_7

TPR_8

TPR_10

TPR_2

TPR_8

TPR_1

TPR_7

TPR_11

TPR_12

TPR_16

TPR_17

TPR_10

TPR_1

TPR_2

TPR_8

TPR_7

TPR_6

Glyco_transf_41

PF13181 TPR_8 122-147 aa PF13431 TPR_17 179-210 aa PF00515 TPR_1 190-216 aa PF13181 TPR_8 190-216 aa PF13432 TPR_16 195-249 aa PF10373 EST1_DNA_bind 209-276 aa PF13374 TPR_10 224-253 aa PF07719 TPR_2 224-256 aa PF13181 TPR_8 224-256 aa PF00515 TPR_1 224-257 aa PF13176 TPR_7 229-256 aa PF13181 TPR_8 299-327 aa PF13374 TPR_10 333-362 aa PF07719 TPR_2 333-365 aa PF13181 TPR_8 333-365 aa PF00515 TPR_1 333-366 aa PF13176 TPR_7 335-365 aa PF13414 TPR_11 342-380 aa PF13424 TPR_12 368-431 aa PF13432 TPR_16 379-434 aa PF13431 TPR_17 391-420 aa PF13374 TPR_10 401-430 aa PF00515 TPR_1 401-433 aa PF07719 TPR_2 401-433 aa PF13181 TPR_8 401-433 aa PF13176 TPR_7 403-435 aa PF13174 TPR_6 406-434 aa PF13844 Glyco_transf_41 478-637 aa PF13844 Glyco_transf_41 654-835 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	122	147	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13431`	TPR_17	Repeat	179	210	3.4e-37	124.3	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF00515`	TPR_1	Repeat	190	216	1.9e-70	230.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	190	216	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13432`	TPR_16	Repeat	195	249	4.5e-25	88.4	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF10373`	EST1_DNA_bind	Repeat	209	276	1.3e-11	45.3	Est1 DNA/RNA binding domain
`XP_057798558.1`	Pfam	`PF13374`	TPR_10	Repeat	224	253	6e-23	80.8	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF07719`	TPR_2	Repeat	224	256	1.6e-49	162.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	224	256	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF00515`	TPR_1	Repeat	224	257	1.9e-70	230.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13176`	TPR_7	Repeat	229	256	1.4e-29	100.3	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	299	327	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13374`	TPR_10	Repeat	333	362	6e-23	80.8	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF07719`	TPR_2	Repeat	333	365	1.6e-49	162.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	333	365	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF00515`	TPR_1	Repeat	333	366	1.9e-70	230.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13176`	TPR_7	Repeat	335	365	1.4e-29	100.3	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13414`	TPR_11	Repeat	342	380	4.3e-46	155.1	TPR repeat
`XP_057798558.1`	Pfam	`PF13424`	TPR_12	Repeat	368	431	1.6e-35	121.8	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13432`	TPR_16	Repeat	379	434	4.5e-25	88.4	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13431`	TPR_17	Repeat	391	420	3.4e-37	124.3	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13374`	TPR_10	Repeat	401	430	6e-23	80.8	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF00515`	TPR_1	Repeat	401	433	1.9e-70	230.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF07719`	TPR_2	Repeat	401	433	1.6e-49	162.7	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13181`	TPR_8	Repeat	401	433	1.2e-45	150.5	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13176`	TPR_7	Repeat	403	435	1.4e-29	100.3	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13174`	TPR_6	Repeat	406	434	1.1e-17	64.0	Tetratricopeptide repeat
`XP_057798558.1`	Pfam	`PF13844`	Glyco_transf_41	Family	478	637	4.3e-54	184.4	Glycosyl transferase family 41
`XP_057798558.1`	Pfam	`PF13844`	Glyco_transf_41	Family	654	835	4.3e-54	184.4	Glycosyl transferase family 41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942575.1
GAACCAAAAGCCTAATTCAGTTTCAAAATCCCTAATTTTCACATTTGGGGATTTGACTTCATTGCCTTTTCCCCTCAATTCCCGTCACCAACATCACGCCGCCTCTCGCTCGTCCAGATTTCTCGACGGCCTTCCCTCTCCTCCATGCCCATTGACCTGCTTCTCACCCCCCCTCTGCCGTAGTCCCCCCGCCGCACCCAAAAGGGGACTCGCGAACCGGAGCCGTCGCTGCAGTCCTTTTCGCCCGTGAGGGTTTCTAA...

CDS

1 records

下载 CDS FASTA

LOC131014563
ATGGAGTTAACAAAGAAGGATGCAGATGGTGAAAAAGTAAGAGATTCACAAGATGGTTCTGTGTTCCTAAACGAAGGGCAGCCTTCTTCGGGCAGCGGCCTACCTCTGGGCATTACCCTGGCAAAGAAGAGTTTTGAAGGAAAAGATGCTTTATCATATGCTAACATTCTCCGTTCTAGGAACAAGTTCGTGGATGCATTTTCTGTTTACGAGAGTCTGCTGGAAAAGGATTGTGAAAATGTTGAAGCTCATATTGGTAA...

Protein

1 records

下载 Protein FASTA

XP_057798558.1
MELTKKDADGEKVRDSQDGSVFLNEGQPSSGSGLPLGITLAKKSFEGKDALSYANILRSRNKFVDAFSVYESLLEKDCENVEAHIGKGICLQMQNLGRLAYESFSEAVRLDPQNACALTHCGILYKDEGRLVEAAEMYQKALKADPSYKLAAECLAIVLTDLGTSLKLAGNTQEGIQKYYDAIKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLTVSPNFEIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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